PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc01530.1.g00230.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 245aa MW: 25650.7 Da PI: 6.7782

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01530.1.g00230.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.7	5e-09	162	209	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k + Ka +L + ++Y++sLq Zmw_sc01530.1.g00230.1.am.mkhc 162 SHSLAERVRREKISQRMKFLQDLVPGC----NKVVGKALMLDEIINYVQSLQ 209 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.20E-10	156	213	No hit	No description
SuperFamily	SSF47459	9.81E-16	156	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.9E-16	158	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.123	158	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-6	162	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-9	164	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MDGDYVTSLL MGASAPGLDF GALDGGLLDT LCGGGGVGLF GPPGGADSRE GSSVSDPAWA 60 RSTGDGGNAR KRKAPAAVGA GEDKEAACLG KVGEAKGPDS KRCRVSTGES PVKPKLEETT 120 GSDGSVADKG TKKGKGKSSK PAVEPPKDYV HVRARRGQAT DSHSLAERVR REKISQRMKF 180 LQDLVPGCNK VVGKALMLDE IINYVQSLQQ QVEQRDFWED GLQSALHIGN EQSQEVGVSV 240 PNFDV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008651560.1	7e-95	BHLH transcription factor isoform X1
TrEMBL	A0A3L6E614	1e-93	A0A3L6E614_MAIZE; Transcription factor bHLH49
STRING	GRMZM2G144275_P04	3e-94	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP919	38	137