PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01527.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 265aa MW: 28887.4 Da PI: 9.3026

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01527.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00014	234	258	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ykCp C+k ++ s+++rH r++ Zmw_sc01527.1.g00100.1.sm.mkhc 234 YKCPtpGCSKIYKFVSDFVRHTRRC 258 9**********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.4E-7	221	256	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.51E-7	221	257	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MRIRRYAARL LSSSAAATKP GSPPPQPAAA WLHAAEDDCC AFCDLIHSSQ QSGVPWKSQE 60 SPEVVKYKGH IAGRVPESEV KSGEHVDLAE GLPAPEAKNC KIDHGHSFNE ADAALGVTND 120 GSVVNEAVVK LEDARGADLV TRADVNPTFK AGQPGPFDAD DGTIEQKDQK LNGVLLLCKK 180 PLNGKLQKML LLAKLLGKQK ILAQLLAMRM MILLWMTHDL LVVTRQVHAG AKPYKCPTPG 240 CSKIYKFVSD FVRHTRRCKP QRLRG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792345.1	2e-30	uncharacterized protein LOC112873563
TrEMBL	A0A3L6SAH4	1e-30	A0A3L6SAH4_PANMI; Zinc finger protein GLI1-like isoform X2
STRING	Pavir.J38242.1.p	1e-29	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11491	32	41