PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01516.1.g00080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 422aa MW: 45355.3 Da PI: 9.7152 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00024 | 278 | 300 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk+F+++ L H ++H Zmw_sc01516.1.g00080.1.am.mk 278 HRCSVCGKVFPSHQALGGHKSSH 300 79**************9999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.159 | 278 | 305 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.12E-8 | 278 | 300 | No hit | No description |
SMART | SM00355 | 0.0083 | 278 | 300 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.9E-11 | 278 | 302 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 280 | 300 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.12E-8 | 342 | 369 | No hit | No description |
Pfam | PF13912 | 1.3E-13 | 346 | 371 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.349 | 347 | 369 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.12 | 347 | 369 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 349 | 369 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MATAAASVHV RVADALLYPE GERAHGTAAG AGSHCHACAS SDACALHLRR AGATRALKAG 60 GEWTAEPAVM RKSSHSRPVQ SGSQMEWNYG TLPSRRAAQC YTYGITRPPA QTRRFAPRGG 120 SPCTIAAGQR PIVLMRQSLR RFHPGADSRP SSRPALHWHN LRSQPSSHPH PLDTPVIFSQ 180 ISRTRPAPFG SGSCTSHRST AMAVDTVLDA PAGLLRRLSC RDLEYEGDQV QAWAKRKRSS 240 RRHPRAPTEE EHLALCLLML GRGHRDYEDQ NPAPATEHRC SVCGKVFPSH QALGGHKSSH 300 RSRPTPPAAA TATTITTVVE DPVVATAASS ASTPATSCST SGTGRVHECS VCKKTFPTGQ 360 ALGGHKRCHY QGAIVTPERG FDLNIPALPD ISEWCVPVTV AEEEDVVLSP LAFKKPRFMI 420 PA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003562286.1 | 3e-57 | zinc finger protein 1 | ||||
TrEMBL | A0A0A9AQT5 | 3e-61 | A0A0A9AQT5_ARUDO; Uncharacterized protein | ||||
STRING | BRADI1G14750.1 | 1e-56 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |