PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01510.1.g00200.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 615aa MW: 64075.7 Da PI: 10.9813

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01510.1.g00200.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	27.2	4.5e-09	336	386	2	52
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaar 52 ++lL ++A av++g+++ a a La l+ a+p+gd+ qRl+a++t AL++r Zmw_sc01510.1.g00200.1.am.mk 336 RQLLSDAAAAVADGNQTVAAAHLAVLKISANPRGDAEQRLVAMMTGALSSR 386 6899*********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	1.6E-6	336	386	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 615 aa Download sequence Send to blast
MLSSPAPIPP IGQILPAAVV ALRRQRHCCR TGVLASDPKQ SQERAIRPTL LSFSSRSTLL 60 FVPPPLSAAS APGFSGMEPA GWCDPRRRAY GYGYGVGSAV DAPPMIRQQQ HPPAAPRPDA 120 AAGATGSVLK RSLSEMERWQ QALCLRAVKQ RTAAPVPPGH HQLDIGAVLA GAASARARGL 180 SGQPSAGFAW PSPQPSSTLS SLTTASPMQP LWQRQVMAAP SAPVAKGAAA TARPTTAREM 240 VLLRELEKQL LGDDEEVEAE AAGSVCGSAV TNSGWGETIH ELNSIAATPL PSHPKTMTAT 300 NRYNTVPMSR SPSNSTSSAT SSTASSSPPT SAASSRQLLS DAAAAVADGN QTVAAAHLAV 360 LKISANPRGD AEQRLVAMMT GALSSRGVAD RVKARLGPAR PGFDVKLDNG RLGVGWMGRV 420 VTVASAWAWG ASVDMISLLV TPVVSADSLA GFLLLPGFTM GWVRAHGMER PVSPPRSSKT 480 SGAGRCARER SEARAGSESA RARLNPESAC SLSAPPHVVA RQAAELHVCR WLNGPLFAFF 540 CPLSSPAPHS PVSSDHSHRS APTRPLLAQG ATVRTKRGGD AYSTQPLVRL RHTGKGWFRN 600 ASPVGCSSSD GYGTT

Sequence ? help Back to Top

Protein Sequence Length: 615 aa Download sequence Send to blast

MLSSPAPIPP IGQILPAAVV ALRRQRHCCR TGVLASDPKQ SQERAIRPTL LSFSSRSTLL  60
FVPPPLSAAS APGFSGMEPA GWCDPRRRAY GYGYGVGSAV DAPPMIRQQQ HPPAAPRPDA  120
AAGATGSVLK RSLSEMERWQ QALCLRAVKQ RTAAPVPPGH HQLDIGAVLA GAASARARGL  180
SGQPSAGFAW PSPQPSSTLS SLTTASPMQP LWQRQVMAAP SAPVAKGAAA TARPTTAREM  240
VLLRELEKQL LGDDEEVEAE AAGSVCGSAV TNSGWGETIH ELNSIAATPL PSHPKTMTAT  300
NRYNTVPMSR SPSNSTSSAT SSTASSSPPT SAASSRQLLS DAAAAVADGN QTVAAAHLAV  360
LKISANPRGD AEQRLVAMMT GALSSRGVAD RVKARLGPAR PGFDVKLDNG RLGVGWMGRV  420
VTVASAWAWG ASVDMISLLV TPVVSADSLA GFLLLPGFTM GWVRAHGMER PVSPPRSSKT  480
SGAGRCARER SEARAGSESA RARLNPESAC SLSAPPHVVA RQAAELHVCR WLNGPLFAFF  540
CPLSSPAPHS PVSSDHSHRS APTRPLLAQG ATVRTKRGGD AYSTQPLVRL RHTGKGWFRN  600
ASPVGCSSSD GYGTT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812574.1	1e-74	scarecrow-like protein 8
TrEMBL	A0A0A9FCJ7	2e-79	A0A0A9FCJ7_ARUDO; Uncharacterized protein
STRING	Sb04g031770.1	1e-69	(Sorghum bicolor)