PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Function |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc01506.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 283aa MW: 29766.6 Da PI: 8.8317

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01506.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	98.2	1.5e-30	24	127	1	89
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssss 69 aag+kdrhsk+ T++g+RdRRvRls+++a+rf+d+qd+LG+d++sk++ WL+ +a + i++l+++ + Zmw_sc01506.1.g00040.1.am.mk 24 AAGGKDRHSKVVTARGLRDRRVRLSVPTAIRFYDVQDRLGVDQPSKAVAWLIGAAAAVIDALPSLdrssfalppavaD--- 101 6899*************************************************************5555533332221... PP TCP 70 asec.eaesssssasnsssg.........k 89 + +a++++s+++ s+g + Zmw_sc01506.1.g00040.1.am.mk 102 ---AdDAGAEVSASE-TSKGsvlslvnapA 127 ...122222222222.22223444433330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.1E-29	26	136	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	29.425	27	85	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MERVVAAGME RAACKRPRAD LDAAAGGKDR HSKVVTARGL RDRRVRLSVP TAIRFYDVQD 60 RLGVDQPSKA VAWLIGAAAA VIDALPSLDR SSFALPPAVA DADDAGAEVS ASETSKGSVL 120 SLVNAPAEIA VPAAAHQTNH AVHAYSGNAG GGGAFAQPLH CAATDDDKSM RQKGPPTLAY 180 YAAQTPSPYI TPARDLGTMP QLAFLHEEQQ QQPAVVFGRG TLQSNAVAAP LWPPAQQHPC 240 LLQRFTSADA AGLPFFLGGG AAPVTSSADR RVQFWNFKQE RKA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	7e-20	32	86	1	55	Putative transcription factor PCF6
5zkt_B	7e-20	32	86	1	55	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269\|PubMed:12000681}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004963209.1	1e-102	transcription factor PCF8
Swissprot	A2ZMR9	1e-68	PCF8_ORYSI; Transcription factor PCF8
TrEMBL	A0A3L6T289	1e-103	A0A3L6T289_PANMI; Transcription factor PCF8
STRING	Pavir.Ca02949.1.p	1e-104	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11553	26	38