PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01500.1.g00210.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 214aa MW: 22387.9 Da PI: 5.2515

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01500.1.g00210.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.00019	73	95	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Zmw_sc01500.1.g00210.1.sm.mk 73 FTCNYCQRKFFSSQALGGHQNAH 95 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.16E-6	71	100	No hit	No description
PROSITE profile	PS50157	11.323	73	100	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	75	95	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MNGEEICQAP GDDVSEISSQ AASNSSGRVT LDLSLTVAAA AAATTESSTT DNSNGDDTQA 60 GPAVAAREPA RVFTCNYCQR KFFSSQALGG HQNAHRRERT LARCALRIDA AAPCGYFADV 120 ASLPLYGSGL YPIGIQAHAS AAHPEPRHLA AAAVEPRRAR GLLAPMPFFV GDDELSFGWP 180 RSFRPAAVAA EPAGSDIISA VVHAVEEPDL TLRL

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001300990.1	2e-92	zinc finger protein 7
Refseq	XP_008680366.1	2e-92	zinc finger protein 7 isoform X1
Refseq	XP_008680370.1	2e-92	zinc finger protein 7 isoform X1
Refseq	XP_023158235.1	2e-92	zinc finger protein 7 isoform X1
Swissprot	Q39263	5e-26	ZFP4_ARATH; Zinc finger protein 4
TrEMBL	A0A0A8XT86	2e-97	A0A0A8XT86_ARUDO; Uncharacterized protein
STRING	GRMZM2G157197_P01	6e-92	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9847	30	41

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]