PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01476.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 348aa    MW: 38144.7 Da    PI: 10.6123
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01476.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.69.9e-21168217255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                    y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  Zmw_sc01476.1.g00050.1.am.mk 168 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYRLRG 217
                                   59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.32E-29167227No hitNo description
PROSITE profilePS5103223.354168225IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-32168227IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-23168227IPR016177DNA-binding domain
SMARTSM003801.5E-35168231IPR001471AP2/ERF domain
PRINTSPR003673.3E-11169180IPR001471AP2/ERF domain
PfamPF008479.4E-15169217IPR001471AP2/ERF domain
PRINTSPR003673.3E-11191207IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MTGELDNVFQ DSYIKMRKQK KKKKKENHRR PERYRRRDAR PTPAPRASGA HPPNSKQRRV  60
QWFRATHLQP TRSGTTTDTC RWSAHVTPSR WPRSAYRAAL KPLEPGGRQL GARASATSTK  120
LPAVVGLHQA IHHPQFITTR TPPHSSDRKP SSPIQPSPDP SPHRSPKLYR GVRQRHWGKW  180
VAEIRLPRNR TRLWLGTFDT AEEAALAYDQ AAYRLRGDAA RLNFPDNAAS RAPLDPAVDA  240
KLQTICATIA AASKGKGGKG ARAVPINAPS AQQPESPSDS SSDEGTGSGS DDEGSSSAAA  300
AAAVAAVAPL AEMGQLDFSE VPWDEAESFV LCKYPSYEID WDALLASN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19167225463ATERF1
3gcc_A1e-19167225463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11522MRKQKKKK
21624RKQKKKKKK
31625RKQKKKKKKE
41836QKKKKKKENHRRPERYRRR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820073.11e-89ethylene-responsive transcription factor RAP2-13-like
SwissprotQ8H1E49e-48RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A2T7D7173e-90A0A2T7D717_9POAL; Uncharacterized protein
STRINGPavir.Fa01600.1.p7e-90(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]