|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Zmw_sc01462.1.g00290.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
Family |
M-type_MADS |
Protein Properties |
Length: 107aa MW: 11650.5 Da PI: 10.1644 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Zmw_sc01462.1.g00290.1 | genome | ZGD | - |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 87.8 | 6.1e-28 | 42 | 91 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
rie+++ rqvtfskRr g+lKKA+ELSvLCdaev +i+fs++g+ly ++s
Zmw_sc01462.1.g00290.1.am.mk 42 RIEDTTSRQVTFSKRRSGLLKKAFELSVLCDAEVGLIVFSPRGRLYQFAS 91
8***********************************************86 PP
|
3D Structure ? help Back to Top |
|
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3kov_A | 3e-18 | 28 | 92 | 1 | 59 | Myocyte-specific enhancer factor 2A |
3kov_B | 3e-18 | 28 | 92 | 1 | 59 | Myocyte-specific enhancer factor 2A |
3kov_I | 3e-18 | 28 | 92 | 1 | 59 | Myocyte-specific enhancer factor 2A |
3kov_J | 3e-18 | 28 | 92 | 1 | 59 | Myocyte-specific enhancer factor 2A |
3mu6_A | 2e-18 | 28 | 92 | 1 | 59 | Myocyte-specific enhancer factor 2A |
3mu6_B | 2e-18 | 28 | 92 | 1 | 59 | Myocyte-specific enhancer factor 2A |
3mu6_C | 2e-18 | 28 | 92 | 1 | 59 | Myocyte-specific enhancer factor 2A |
3mu6_D | 2e-18 | 28 | 92 | 1 | 59 | Myocyte-specific enhancer factor 2A |
3p57_A | 3e-18 | 28 | 92 | 1 | 59 | Myocyte-specific enhancer factor 2A |
3p57_B | 3e-18 | 28 | 92 | 1 | 59 | Myocyte-specific enhancer factor 2A |
3p57_C | 3e-18 | 28 | 92 | 1 | 59 | Myocyte-specific enhancer factor 2A |
3p57_D | 3e-18 | 28 | 92 | 1 | 59 | Myocyte-specific enhancer factor 2A |
3p57_I | 3e-18 | 28 | 92 | 1 | 59 | Myocyte-specific enhancer factor 2A |
3p57_J | 3e-18 | 28 | 92 | 1 | 59 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor. |
UniProt | Probable transcription factor. |
Publications
? help Back to Top |
- Rice Chromosome 10 Sequencing Consortium
In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] - Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Bai Z, et al.
The impact and origin of copy number variations in the Oryza species. BMC Genomics, 2016. 17: p. 261 [PMID:27025496] - Shibaya T, et al.
Hd18, Encoding Histone Acetylase Related to Arabidopsis FLOWERING LOCUS D, is Involved in the Control of Flowering Time in Rice. Plant Cell Physiol., 2016. 57(9): p. 1828-38 [PMID:27318280] - Han Z,Zhang B,Zhao H,Ayaad M,Xing Y
Genome-Wide Association Studies Reveal that Diverse Heading Date Genes Respond to Short and Long Day Lengths between Indica and Japonica Rice. Front Plant Sci, 2016. 7: p. 1270 [PMID:27621738]
|