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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01434.1.g00070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 223aa MW: 24103.9 Da PI: 5.6274 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.2 | 2e-18 | 51 | 101 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ykGVr++ grWv+e+r+p g ++r++lg+f tae+Aa+a++ a+++l+g Zmw_sc01434.1.g00070.1.sm.mk 51 PVYKGVRRRN-PGRWVCEVREP--HG-KQRIWLGTFETAEMAARAHDVAALALRG 101 68*****887.9******9996..33.5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.1E-14 | 51 | 101 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.9E-21 | 52 | 110 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.9E-30 | 52 | 111 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.694 | 52 | 109 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-26 | 52 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-8 | 53 | 64 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.61E-29 | 53 | 111 | No hit | No description |
PRINTS | PR00367 | 2.7E-8 | 75 | 91 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MDVGALSSDY SSGMPSPVGG SDGSSASYMT VSSAPPKRRA GRTKFKETRH PVYKGVRRRN 60 PGRWVCEVRE PHGKQRIWLG TFETAEMAAR AHDVAALALR GLGACLNFAD SPRLLRVPPL 120 GAGHDEIRRA AAEAAEQFRP AFSQDQGNVA VEEPITTLPD LLSSETHSTD RHPYCVVDDK 180 FDLGMQGYLD MAQGMLIDPP PMEGSSGNGG DDDDGGEVKL WSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-13 | 50 | 108 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00644 | PBM | Transfer from LOC_Os02g45450 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953437.2 | 1e-117 | dehydration-responsive element-binding protein 1G | ||||
Swissprot | Q6EP77 | 3e-95 | DRE1G_ORYSJ; Dehydration-responsive element-binding protein 1G | ||||
TrEMBL | K3YVG6 | 1e-116 | K3YVG6_SETIT; Uncharacterized protein | ||||
STRING | Si018262m | 1e-117 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Publications ? help Back to Top | |||
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