PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01433.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 349aa    MW: 38294.2 Da    PI: 11.037
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01433.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.43e-26959151
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  krien+ nrqvtf+kRr+g++KKA+ELS+LCda + vi+f +tg+ly++ss
  Zmw_sc01433.1.g00050.1.am.mk  9 KRIENEANRQVTFTKRRAGMFKKAKELSILCDAPIGVIVFTNTGQLYDFSS 59
                                  79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.665161IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-33160IPR002100Transcription factor, MADS-box
CDDcd002651.74E-38377No hitNo description
PRINTSPR004041.8E-24323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-28378IPR002100Transcription factor, MADS-box
PfamPF003191.5E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-243859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MVRGKTILKR IENEANRQVT FTKRRAGMFK KAKELSILCD APIGVIVFTN TGQLYDFSSS  60
SMRSIIERYR HVKEGQQYVA ASTEAKPSHM EAAGVAPQLG WGRRRDRGGA RGGLKVVDHD  120
WPWRLPSSMP SVHWTRMAPS RSPYLCTRCV LDADELPGTV LHLCVLAARC RASGRRPSSS  180
QKWRDRTQPQ NHVPRPCCSH ALRVTVPILL CFSGYKMKHS YCTSPYFFSG TESRAAFVPL  240
CADHRALPFA RRPPTSPALS TASPARPTPM LASQGHPPSP PPWPASLGAS PSQCTTALAL  300
VSLIVALGAG PLSSLCHRRT TTSLFRARPS PQSTFPGEFS PLQSTRAPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-16177177MEF2C
5f28_B2e-16177177MEF2C
5f28_C2e-16177177MEF2C
5f28_D2e-16177177MEF2C
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7232422