PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc01432.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 336aa MW: 35073.7 Da PI: 6.4096

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01432.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.1	2.9e-31	152	208	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 +Dg++WrKYGqK++k++++prsYY+Cts++C +kk+ve+s +dp+++++tYeg H h Zmw_sc01432.1.g00020.1.am.mk 152 SDGFKWRKYGQKSIKNNPYPRSYYKCTSSRCGAKKHVEKSVDDPEMLIVTYEGPHLH 208 7******************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.5E-30	145	209	IPR003657	WRKY domain
PROSITE profile	PS50811	27.462	146	211	IPR003657	WRKY domain
SuperFamily	SSF118290	3.66E-26	149	210	IPR003657	WRKY domain
SMART	SM00774	1.7E-35	151	210	IPR003657	WRKY domain
Pfam	PF03106	1.8E-25	153	208	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MTGYALHGDE ATTDGAAAVW PGELDEQLIS ELLSDDSLLG ALHGPAGDSA HYCSGDAGPV 60 DAAAPAPCNS GGDGTAAERE VPQPAAVNRA LCSVYSGPTI QDIEKALSSS RPCHWMSNRR 120 YSSSIGRFGA TSTAPESKYT TKVRTCAGKM PSDGFKWRKY GQKSIKNNPY PRSYYKCTSS 180 RCGAKKHVEK SVDDPEMLIV TYEGPHLHGP QPPFPRRQWT SADFLSGAAA TRRGAEAPSP 240 PLTASSGGAH PNNQPHTCDA AAGARGGGVS VVADGRENGR AEADVVVKAT RWCDGCSGAS 300 VAAPGDGTAL PCDSPPTTWS CPDSYFSSWS LEALLP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-21	150	208	16	74	Probable WRKY transcription factor 4
2lex_A	3e-21	150	208	16	74	Probable WRKY transcription factor 4
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004970545.1	1e-101	WRKY transcription factor WRKY24 isoform X1
TrEMBL	A0A2T7DEI5	1e-100	A0A2T7DEI5_9POAL; Uncharacterized protein
TrEMBL	A0A368RD25	1e-100	A0A368RD25_SETIT; Uncharacterized protein
STRING	Sb03g039550.1	2e-91	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13144	26	33