PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc01425.1.g00200.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 603aa MW: 63890 Da PI: 8.7942

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01425.1.g00200.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41	3.4e-13	303	354	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+ +P++ + ++ + a+i A++Y+k+L+ Zmw_sc01425.1.g00200.1.am.mk 303 QRMSHIAVERNRRKQMNEYLAVLRSAMPPS---YVQRGDQASIIGGAINYVKELE 354 79**************************...9****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.66E-13	301	358	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.8E-14	301	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.561	302	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.16E-16	302	367	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-10	303	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-10	308	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 603 aa Download sequence Send to blast
MADVASHVPD RVRTQAPLRY VLDDVERGQH SLHPCTVGRA SGSSRDGHND SLIIRACQGI 60 VIHGADAADM PGACWFPVAT SRPHVSIRSG SGEGQPPSAA KLYRASTADA TARVQPARCR 120 EPIVTSGQRI RSTASSLQGM DGEVTALDRP QCREPSKFTV VPRRVGQPRQ VNPLPLIAVV 180 SAEGLFGCWS MAASGGGGWS WNHEHGDGVM EGPVGLEGGG SASATWDGGA SSSVLMPGVQ 240 KPAGNSAAPP LAHNGGRGGN APAGAEFSKE GAAAATAISP VSGVRRKRRM ARSSKNREEV 300 ESQRMSHIAV ERNRRKQMNE YLAVLRSAMP PSYVQRGDQA SIIGGAINYV KELEQLVQTL 360 EARKHTRNNT PSSPGVDAAA ATPFAGFFTF PQYSMSAAGV SSTAANMPRP VDVVDGNAND 420 ADGNDTAAGS RKSSVADIEV TMVETHANLK VLSRRRPRQL LCVVAGLQGH RLTVLHLNVT 480 SAGPMALYSL SLKVPPFAVA PAFRSFPQQR SLIQTSFQML TQGRVARGHN PKNIHFCVLI 540 YDLMIVLLPL THLFDGTAAR VQVEDDCQLS SADDIAAAVH RIVEALEHEQ KDLHDGGGEL 600 GSS

Sequence ? help Back to Top

Protein Sequence Length: 603 aa Download sequence Send to blast

MADVASHVPD RVRTQAPLRY VLDDVERGQH SLHPCTVGRA SGSSRDGHND SLIIRACQGI  60
VIHGADAADM PGACWFPVAT SRPHVSIRSG SGEGQPPSAA KLYRASTADA TARVQPARCR  120
EPIVTSGQRI RSTASSLQGM DGEVTALDRP QCREPSKFTV VPRRVGQPRQ VNPLPLIAVV  180
SAEGLFGCWS MAASGGGGWS WNHEHGDGVM EGPVGLEGGG SASATWDGGA SSSVLMPGVQ  240
KPAGNSAAPP LAHNGGRGGN APAGAEFSKE GAAAATAISP VSGVRRKRRM ARSSKNREEV  300
ESQRMSHIAV ERNRRKQMNE YLAVLRSAMP PSYVQRGDQA SIIGGAINYV KELEQLVQTL  360
EARKHTRNNT PSSPGVDAAA ATPFAGFFTF PQYSMSAAGV SSTAANMPRP VDVVDGNAND  420
ADGNDTAAGS RKSSVADIEV TMVETHANLK VLSRRRPRQL LCVVAGLQGH RLTVLHLNVT  480
SAGPMALYSL SLKVPPFAVA PAFRSFPQQR SLIQTSFQML TQGRVARGHN PKNIHFCVLI  540
YDLMIVLLPL THLFDGTAAR VQVEDDCQLS SADDIAAAVH RIVEALEHEQ KDLHDGGGEL  600
GSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	303	314	RMSHIAVERNRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973718.1	9e-84	transcription factor bHLH94
Refseq	XP_020156069.1	4e-84	transcription factor bHLH94-like
STRING	TRIUR3_09788-P1	4e-86	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP741	38	156