PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01421.1.g00180.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 356aa    MW: 35974.8 Da    PI: 8.2185
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01421.1.g00180.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.7e-2096144355
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa+a++a +++l+g
  Zmw_sc01421.1.g00180.1.am.mk  96 YRGVRRRP-WGKWAAEIRDPK----KaARVWLGTFATAEDAARAYDAVALRLRG 144
                                   9*******.**********94....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.9E-3295153IPR001471AP2/ERF domain
SMARTSM003801.4E-3695158IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2295153IPR016177DNA-binding domain
PROSITE profilePS5103225.01495152IPR001471AP2/ERF domain
PfamPF008472.4E-1395144IPR001471AP2/ERF domain
PRINTSPR003672.4E-1196107IPR001471AP2/ERF domain
CDDcd000187.42E-26103154No hitNo description
PRINTSPR003672.4E-11118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MWTPPFLAPA PATLSEDPEE AAIVAALTQV LAGGRSTTTT PMPPASLCPT TAMVCGPWHV  60
GQAACQGEPS ASASASVGQV SEPGAAVATA PIRRNYRGVR RRPWGKWAAE IRDPKKAARV  120
WLGTFATAED AARAYDAVAL RLRGSRAKLN FPEDTASSRR RPPAPVGSRQ PSSSACDSVA  180
GRRLSCPEVV HHRRGAPDDF TGCSNGRFLS SWSIGGQASL SPVCSAAPGA PLLCGSQGMR  240
ISETDAPVNT VFPNSSDPGA TGGAGAPHPR CSPSSRHSSI HCVLQDSDDL GACPAADIPR  300
SKPSSGVPPS KDPVTSVDSQ PRGDGAGGGG GAXAAAGGFG GGAADGAWPT GAQELG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2394152463ATERF1
3gcc_A4e-2394152463ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK3YYC06e-53K3YYC0_SETIT; Uncharacterized protein
STRINGSi019270m1e-53(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150381120