PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01418.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 309aa MW: 33625.4 Da PI: 4.9374

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01418.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.2	9.2e-11	234	274	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Zmw_sc01418.1.g00080.1.am.mkhc 234 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 274 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.25	224	273	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.84E-14	227	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-12	229	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-11	230	279	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.62E-12	233	278	No hit	No description
Pfam	PF00010	3.7E-8	234	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MESSEASWHS FDPSAAMEDS DAMAQLLGVQ YFGNEQQKQL ATVYWPGQDA DQYCGGLAPY 60 YYTPQHLNSG ASYDEHGYFG GGTVAMAGDF FVPGEDMADP SFILDLNLEF EDQDGGGKPP 120 PACKRKLELE QKDEISTTGI VPIKKRGRPS TATPAPTKGK TARKSQKAAA SVQGNNHDDS 180 NGILQSSSNH MSDDDSLEMT ACSNVSSASK KSSGRAKATA ERGAATDPQS LYARKRRERI 240 NERLKILQNL VPNGTKVDIS TMLEEAVQYV KFLQLQIKLL SSDDLWMFAP IAYNGVNVGL 300 DLKISPPQQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796821.1	1e-135	transcription factor bHLH54-like
TrEMBL	A0A2S3IT63	1e-133	A0A2S3IT63_9POAL; Uncharacterized protein
TrEMBL	A0A2T7CG43	1e-133	A0A2T7CG43_9POAL; Uncharacterized protein
STRING	Pavir.Ia04640.1.p	1e-139	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11680	28	32