PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01411.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Trihelix | ||||||||
Protein Properties | Length: 321aa MW: 34904.3 Da PI: 10.3015 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 41.3 | 4.1e-13 | 18 | 103 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtse 74 +W++ e+ aL++a ++ +l+rg+l++p+W+ev++++ ++r r+ +qCk++ + l+k+yk+++++ ++ Zmw_sc01411.1.g00050.1.sm.mk 18 CWSEGETAALVDAWGSRYLELNRGSLRQPQWREVADAVnsrpgasARRRPPRTDIQCKNRVDTLKKKYKAERARGGS---- 94 7*******************************************999999*********************998886.... PP trihelix 75 ssstcpyfdql 85 s ++++ +l Zmw_sc01411.1.g00050.1.sm.mk 95 --SPWAFYGEL 103 ..357777666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 6.6E-24 | 16 | 104 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MDGKLPPPNP NLPYREDCWS EGETAALVDA WGSRYLELNR GSLRQPQWRE VADAVNSRPG 60 ASARRRPPRT DIQCKNRVDT LKKKYKAERA RGGSSPWAFY GELDLLVGPT LSASGGAAGK 120 KTSPPRAVPM LRRRQSPSRS PSPPMALPLP NYGRGSNLPS AVLHNAAAAA AAAAAESDSY 180 DGYNNNNDYD DDAASQQSPS RSVSSRSGGG APPPAVGNKR KTSGSGGFGE LARAIETFAE 240 MYERMEAAKQ RHAEEMERQR IKFLKDLELK RMQAFVDMQL QLARAKHARK GDASSEMLMS 300 QANGIMLLIV KTIVATVKSE H |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002458303.1 | 1e-140 | trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A3L6FIV1 | 1e-147 | A0A3L6FIV1_MAIZE; Trihelix transcription factor ASIL2 | ||||
STRING | Sb03g030880.1 | 1e-140 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2065 | 32 | 79 |