PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01404.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 497aa MW: 51741.7 Da PI: 7.5494

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01404.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.4	8.2e-30	241	300	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+aed++++++tYeg+Hnh+ Zmw_sc01404.1.g00030.1.sm.mkhc 241 MNDGCQWRKYGQKISKGNPCPRAYYRCTVApNCPVRKQVQRCAEDKTILITTYEGTHNHQ 300 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.4E-31	228	302	IPR003657	WRKY domain
SuperFamily	SSF118290	4.97E-27	234	302	IPR003657	WRKY domain
PROSITE profile	PS50811	27.864	236	302	IPR003657	WRKY domain
SMART	SM00774	4.3E-35	241	301	IPR003657	WRKY domain
Pfam	PF03106	4.7E-26	242	300	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MEVAVERLPV KEEKRADDRP EIVAIGSALP IVFESFQSPQ RAASIKLQED NNRLEAARAE 60 MGEVKEENER LKTLLSRIVS DYQSLQMHYL DVVKVREQSG KAKLPAEPAP VADVDDLVSL 120 SLGTRSNGGA RPKGHERSSS SSGTADDSQL SLGLGFGRGN GPSTDDDKAS GASAGPVLNL 180 SSGSSSAEDT AKISEADASR PGETRKSPSA GAGDGSADDE VQQQAKRIRV SVRVKCDTPT 240 MNDGCQWRKY GQKISKGNPC PRAYYRCTVA PNCPVRKQVQ RCAEDKTILI TTYEGTHNHQ 300 LPPAATAMAS TTSAAAAMLT TGSTSSTPAA SLARHHLPFA THAGLLGPTT MVSTAASCPT 360 ITLDLTAPAT PAHALMESSP YAAGAYESKA LPAAWSSGLP AYGGNLPSYY AAKSSPAMGN 420 LFGGLGLPSR SDHLFGQSSF LQRSTSLGGG QSAVAPVVTD TLAKAITSDP SFQSALAAMI 480 TSYMGRGAGS GGESTHK

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MEVAVERLPV KEEKRADDRP EIVAIGSALP IVFESFQSPQ RAASIKLQED NNRLEAARAE  60
MGEVKEENER LKTLLSRIVS DYQSLQMHYL DVVKVREQSG KAKLPAEPAP VADVDDLVSL  120
SLGTRSNGGA RPKGHERSSS SSGTADDSQL SLGLGFGRGN GPSTDDDKAS GASAGPVLNL  180
SSGSSSAEDT AKISEADASR PGETRKSPSA GAGDGSADDE VQQQAKRIRV SVRVKCDTPT  240
MNDGCQWRKY GQKISKGNPC PRAYYRCTVA PNCPVRKQVQ RCAEDKTILI TTYEGTHNHQ  300
LPPAATAMAS TTSAAAAMLT TGSTSSTPAA SLARHHLPFA THAGLLGPTT MVSTAASCPT  360
ITLDLTAPAT PAHALMESSP YAAGAYESKA LPAAWSSGLP AYGGNLPSYY AAKSSPAMGN  420
LFGGLGLPSR SDHLFGQSSF LQRSTSLGGG QSAVAPVVTD TLAKAITSDP SFQSALAAMI  480
TSYMGRGAGS GGESTHK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	7e-22	229	304	2	76	WRKY transcription factor 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002457211.1	0.0	probable WRKY transcription factor 72
TrEMBL	A0A3L6SPC5	0.0	A0A3L6SPC5_PANMI; Putative WRKY transcription factor 72
STRING	Sb03g003370.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12081	29	38