PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01399.1.g00180.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 832aa    MW: 88456.7 Da    PI: 8.7532
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01399.1.g00180.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.5e-30236293260
                                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                   +Dgy+WrKYGqK+vk se+prsYY+Ct+++C+vkkkvers+ +++v+ei+Y+g Hnh+k
  Zmw_sc01399.1.g00180.1.am.mk 236 EDGYSWRKYGQKQVKHSEYPRSYYKCTHPNCQVKKKVERSH-EGHVTEIVYKGMHNHPK 293
                                   8****************************************.***************85 PP
2WRKY105.23.3e-33443501159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d + v++tYeg+Hnhe
  Zmw_sc01399.1.g00180.1.am.mk 443 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLQSVITTYEGKHNHE 501
                                   59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-28227294IPR003657WRKY domain
SuperFamilySSF1182901.57E-25229294IPR003657WRKY domain
PROSITE profilePS5081122.699230294IPR003657WRKY domain
SMARTSM007743.6E-34235293IPR003657WRKY domain
PfamPF031061.9E-23236292IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.1E-37428503IPR003657WRKY domain
SuperFamilySSF1182905.49E-29435503IPR003657WRKY domain
PROSITE profilePS5081137.149438503IPR003657WRKY domain
SMARTSM007743.0E-38443502IPR003657WRKY domain
PfamPF031062.1E-25444501IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009555Biological Processpollen development
GO:0009846Biological Processpollen germination
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 832 aa     Download sequence    Send to blast
MDGHVAKEEW KDQNPSREAL MPSVLTGAFP PDTTGRDGNE GANFGFEKHG FAANSPQEGG  60
RSLPMTPQFG QKTGSSSSFA ERVHARTGFR VPKLNVLVST ATGADNAVPG ASSPYLTIPP  120
GLSPATLLES PVFISNAMES SRNNQHPSPR STQVPIKSEA NVQTVEATTT NLPDELNLQH  180
LNVGQPIQKS GSKQSRPAPD PVTGTEHLSP PDHSQQTEES DARGDLTSVA TASPAEDGYS  240
WRKYGQKQVK HSEYPRSYYK CTHPNCQVKK KVERSHEGHV TEIVYKGMHN HPKPAQSRRP  300
GVPAVHSFGD AQVNASDSPG SQAKNPWQNN AGVQDSRGDG VDPTSSPSVP GELCDSSPSM  360
QVRDGARFGS PGGVDVTSAV SDEVDGDRVT HGSLSQGGAD AEGDELESKR RKLESYAIDM  420
GCASRAVREP RVVIQTTSEV DILDDGYRWR KYGQKVVKGN PNPRSYYKCT HPGCSVRKHV  480
ERASHDLQSV ITTYEGKHNH EVPAARNSAH PSSAAPGAAM AAAGHHRAGA RLPDHHHSSV  540
QDTGLMRLGG CAFGGLPPRD PLVPMANYPY ATFGASLPSL PMLPGPLGPV EGLKVPMLAT  600
SIHRPLLRHR QAIEAAGLVE VKREAGAAGS PGGDGSGNDN ADAAATVYQQ LVQRRRMQLG  660
HKMPGCQQPS EKAFAGKPEP VPFSRAATGD IAAVVMIDAG QMASSITQLA AAGHPSRFRT  720
RRTLPRRVLH LRLPPLPRCQ GPALPGEASP PKPSESAVCE DSIKRIRTPA ESPRSYLDFA  780
AVAYPYRVLP PYTPLSLEVA NEGEAVVAGM GAAHQLGGGG AAIGTSKRRS VR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-36236504878Probable WRKY transcription factor 4
2lex_A7e-36236504878Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169214.10.0uncharacterized protein LOC100383070
RefseqXP_008668376.10.0putative WRKY DNA-binding domain superfamily protein isoform X1
RefseqXP_012702708.10.0probable WRKY transcription factor 34
RefseqXP_022683649.10.0probable WRKY transcription factor 34
TrEMBLA0A1E5WCK30.0A0A1E5WCK3_9POAL; Putative WRKY transcription factor 2
STRINGSi012785m0.0(Setaria italica)
STRINGGRMZM5G816457_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100