PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01396.1.g00240.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 293aa MW: 30311.8 Da PI: 8.1449

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01396.1.g00240.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	46.6	7.2e-15	102	130	34	62
zf-Dof 34 kaCrryWtkGGalrnvPvGggrrknkkss 62 +aCrryWt+GGalrnvPvGgg+r+n k+ Zmw_sc01396.1.g00240.1.am.mk 102 QACRRYWTRGGALRNVPVGGGCRRNTKRA 130 68**********************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.5E-9	102	128	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	6.0E-8	102	128	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MAFSLPILLD PPSWDQMQMQ QQRSLQCLLG GGSDHHHLMP SPAGLAPLPD GPPDTAASAP 60 AGGVSSTSLQ KQATAETAQL SRQGVSMAER ARLARVXXXX HQACRRYWTR GGALRNVPVG 120 GGCRRNTKRA SKKASRQGAA GGATAASSSS STTTTSTTVT TTTTSSAAAA EVLASMHAQL 180 PHLGLPPAVA LEASLEGYHH YLPLQMQQQF LQQGLDGYHF TDGDGGGVFA DGLPRGVASG 240 LLAQLAAVKM EGHNNGGAVA AAHEQSYWPG SGGNEWPTEF LSGFSLSSSG NVL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008668091.1	3e-86	dof zinc finger protein DOF2.2 isoform X1
TrEMBL	A0A317Y8M1	2e-94	A0A317Y8M1_MAIZE; Dof zinc finger protein DOF5.1
TrEMBL	B6U2U9	2e-94	B6U2U9_MAIZE; Uncharacterized protein
STRING	Pavir.Ca02598.1.p	5e-87	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367