PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01373.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 427aa MW: 47030.2 Da PI: 9.8292

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01373.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23	1.4e-07	191	235	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h +rEr+RR+++ ++++ L l+ + K +K +i++ A YI++L Zmw_sc01373.1.g00030.1.am.mk 191 HMMRERQRREKLSQSYADLYALVAAR-----SKGDKNSIVQSAAIYIHEL 235 889********************7.....6999999*******998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.604	186	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-11	186	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.14E-7	190	236	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.3E-9	190	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-5	191	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.0E-5	192	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MARPCVLYGC SPNRRDGDVC DAGASLLARG TRTRRSTELF GTTPCVTIRL RGDKPLVTPR 60 PPLHGCLLAE RRRSPGEMQV GMDSYYAGFG FNDEIPCFYP HGAAPASPEL PFGFDAVSPF 120 VEPPGAPVLQ AGSEVRGYGG AAGPEVITGG APQMEMMDAM GAMRADRDQC QTRGEGRRQP 180 GTVESSRGFR HMMRERQRRE KLSQSYADLY ALVAARSKGD KNSIVQSAAI YIHELKGARA 240 QLHRRNEELK ARILGHDARQ PSVKVDFEVD DPASGIDSMI GALRRLKSMG VKARGIRSNM 300 TGGRLWTEMN IETTIAASDV EKAVEEALTQ EVERKQQQQM ADEPAPARVQ NVYARGWACP 360 AESSGQRHRS VDPRIRRFAS WKFHLPILIR WRKSHGSAPT AQSRCCRDRR DDANPGSGRL 420 GSLDSTR

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MARPCVLYGC SPNRRDGDVC DAGASLLARG TRTRRSTELF GTTPCVTIRL RGDKPLVTPR  60
PPLHGCLLAE RRRSPGEMQV GMDSYYAGFG FNDEIPCFYP HGAAPASPEL PFGFDAVSPF  120
VEPPGAPVLQ AGSEVRGYGG AAGPEVITGG APQMEMMDAM GAMRADRDQC QTRGEGRRQP  180
GTVESSRGFR HMMRERQRRE KLSQSYADLY ALVAARSKGD KNSIVQSAAI YIHELKGARA  240
QLHRRNEELK ARILGHDARQ PSVKVDFEVD DPASGIDSMI GALRRLKSMG VKARGIRSNM  300
TGGRLWTEMN IETTIAASDV EKAVEEALTQ EVERKQQQQM ADEPAPARVQ NVYARGWACP  360
AESSGQRHRS VDPRIRRFAS WKFHLPILIR WRKSHGSAPT AQSRCCRDRR DDANPGSGRL  420
GSLDSTR

Functional Description ? help Back to Top
Source	Description
UniProt	May act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269\|PubMed:21332845}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269\|PubMed:21332845}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794972.1	1e-103	transcription factor BHLH148-like
Swissprot	Q75KV9	1e-87	BH148_ORYSJ; Transcription factor BHLH148
TrEMBL	A0A2S3II72	1e-102	A0A2S3II72_9POAL; Uncharacterized protein
STRING	Pavir.Ia00623.1.p	1e-101	(Panicum virgatum)
STRING	Si036716m	1e-101	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5940	34	50

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217]