PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01371.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 444aa MW: 49649 Da PI: 4.1462

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01371.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	154.9	3.6e-48	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknra 77 lppGfrFhPtd el ++yLk+k+ gk+l + ++i+ev++yk+ PwdLp k ++++++ ew+fF++rdkky++g+r+nra Zmw_sc01371.1.g00100.1.am.mkhc 6 LPPGFRFHPTDVELCSYYLKRKIMGKSLIV-DAIAEVELYKFAPWDLPdKsCLRSRDLEWFFFCPRDKKYPNGSRTNRA 83 79***********************988.89**********96347777888***************** PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 t +gyWk++gkd+ ++ +++ vg kktL+f++g+apkg +tdWvm ey++ Zmw_sc01371.1.g00100.1.am.mkhc 84 TPNGYWKTSGKDRIIML-NSRIVGSKKTLIFHEGKAPKGDRTDWVMYEYKM 133 *************.999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.71E-60	3	156	IPR003441	NAC domain
PROSITE profile	PS51005	55.804	6	156	IPR003441	NAC domain
Pfam	PF02365	1.6E-24	7	132	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MAQTSLPPGF RFHPTDVELC SYYLKRKIMG KSLIVDAIAE VELYKFAPWD LPDKSCLRSR 60 DLEWFFFCPR DKKYPNGSRT NRATPNGYWK TSGKDRIIML NSRIVGSKKT LIFHEGKAPK 120 GDRTDWVMYE YKMEDDSLVS AGFSKDAYVL CKIFKKSGLG PRIGEQYGAP FNEDEWENAE 180 GETSMFHLMP SSEVVNPVED SHVQQATPAG AIEEPILQHS SAACAREELS CDITAVAENM 240 TFSNAVAGSD IQDGLVSENN VSDEVNNFCD APEFDALLLE ELSQFLNDSP HENSFGGNSA 300 LPPMSEAEAH AFEVNTLDFY NELSGLCEFD DMPNNFYTGD DGTMEHTTLP VDRELSADEF 360 VELNDLLASD PSFPFELPAQ NNQYLQFPLA QYTYNGHHND ITAPPASFEP SCWLPTNSSI 420 FDMFPPANNS DFATDQATNF QTQA

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MAQTSLPPGF RFHPTDVELC SYYLKRKIMG KSLIVDAIAE VELYKFAPWD LPDKSCLRSR  60
DLEWFFFCPR DKKYPNGSRT NRATPNGYWK TSGKDRIIML NSRIVGSKKT LIFHEGKAPK  120
GDRTDWVMYE YKMEDDSLVS AGFSKDAYVL CKIFKKSGLG PRIGEQYGAP FNEDEWENAE  180
GETSMFHLMP SSEVVNPVED SHVQQATPAG AIEEPILQHS SAACAREELS CDITAVAENM  240
TFSNAVAGSD IQDGLVSENN VSDEVNNFCD APEFDALLLE ELSQFLNDSP HENSFGGNSA  300
LPPMSEAEAH AFEVNTLDFY NELSGLCEFD DMPNNFYTGD DGTMEHTTLP VDRELSADEF  360
VELNDLLASD PSFPFELPAQ NNQYLQFPLA QYTYNGHHND ITAPPASFEP SCWLPTNSSI  420
FDMFPPANNS DFATDQATNF QTQA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-51	2	157	11	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250\|UniProtKB:Q9C8W9}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00583	DAP	Transfer from AT5G64060	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014660428.1	0.0	NAC domain-containing protein 82
Swissprot	Q9FY82	3e-80	NAC82_ARATH; NAC domain-containing protein 82
TrEMBL	A0A368QI29	0.0	A0A368QI29_SETIT; Uncharacterized protein
STRING	Pavir.J02083.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4731	36	64

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Deeken R, et al. Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments. Plant J., 2008. 55(5): p. 746-59 [PMID:18485061] Ohbayashi I, et al. Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis. Plant Cell, 2017. 29(10): p. 2644-2660 [PMID:28899981]