PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01369.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 767aa MW: 83949.6 Da PI: 11.0832

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01369.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	117.6	1.6e-36	591	767	195	374
GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275 + +++ +a + +l l + +++++ ++ + ++L s +P vv ++eqe+++n++++++rf++a+ +y a++dslea+l Zmw_sc01369.1.g00090.1.am.mk 591 QHQQNQQVAAQQALYLRAVRQRTAAATD-IAALLGGTPSHRPMVVALIEQELNTNTAPLAARFTDACAHYGAILDSLEATL 670 4566777888888888888766666666.999*********************************************** PP GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356 +r++ er++ E + l+++++n+v eg++r er+e ++kWr+r+++aGF+pv+l+ ++a+q+ + ++ +++ e+g Zmw_sc01369.1.g00090.1.am.mk 671 GRDNAERTMPESA-LAKKASNAVGREGSDRLERCEVFGKWRARFGMAGFRPVALNPSIADQVVARCGPTP-PALSMKTENG 749 ******999.9*********************************************999999.559*** PP GRAS 357 slvlgWkdrpLvsvSaWr 374 l +gW++r ++++SaWr Zmw_sc01369.1.g00090.1.am.mk 750 VLRIGWMGRVVTVASAWR 767 ***************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	12.738	445	748	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.5E-34	591	767	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 767 aa Download sequence Send to blast
MKPVAATTVD ASWNGFQIPI HPEEHGKSST HAFEKKKRWP KNGRLCYGIR LALPGLHRAP 60 GFLSFHSHEC SGPCAMATAR RAVVDVDADT PTWLSQLDVR PLARGQVGAK WRSYTLHMTV 120 RHGSFSKASI RLSAGDGVLG SSAFLNFSRS PTGRVEERDV LVRSTSPSPM SPSAARARPA 180 QTSGLEYETT ADVVSRNGDD RRASGLARRQ RAYALRFHPP AMLERAVNET PTRPGRGAHH 240 TEYEATASTP WLAVWYGLTG RGYQSLTGHR RNPCREIRQS IRHLLPTPWR RTSSPQVCLP 300 CAGLNCIKAS VRRYAPHWWL YRTGKRESAT TRPRRPQSPR LVRQFGPEHS ESWLTRVSPG 360 LPIIIVWPGG RLTGHRRRGL PKPKGLESDF CGIQYFYTKS KLAEIGFPGP LSVSCGRACH 420 SVQDTCGHRA GDGIIVSRCR LRNPAPLFHF TFTAHHSAIP CPGLALNPEQ SSATGPRHYA 480 SPIDTSAPTA TGDWPTPSAR VPPNRRPIGN GGFVSSPSSL FRLRSLSLSL SLSPSLPACM 540 EPGAPWRDPR QGYAYGFGSA MQIPLQQQRR PDAVAAGGVL KRSLGELERW QHQQNQQVAA 600 QQALYLRAVR QRTAAATDIA ALLGGTPSHR PMVVALIEQE LNTNTAPLAA RFTDACAHYG 660 AILDSLEATL GRDNAERTMP ESALAKKASN AVGREGSDRL ERCEVFGKWR ARFGMAGFRP 720 VALNPSIADQ VVARCGPTPP ALSMKTENGV LRIGWMGRVV TVASAWR

Sequence ? help Back to Top

Protein Sequence Length: 767 aa Download sequence Send to blast

MKPVAATTVD ASWNGFQIPI HPEEHGKSST HAFEKKKRWP KNGRLCYGIR LALPGLHRAP  60
GFLSFHSHEC SGPCAMATAR RAVVDVDADT PTWLSQLDVR PLARGQVGAK WRSYTLHMTV  120
RHGSFSKASI RLSAGDGVLG SSAFLNFSRS PTGRVEERDV LVRSTSPSPM SPSAARARPA  180
QTSGLEYETT ADVVSRNGDD RRASGLARRQ RAYALRFHPP AMLERAVNET PTRPGRGAHH  240
TEYEATASTP WLAVWYGLTG RGYQSLTGHR RNPCREIRQS IRHLLPTPWR RTSSPQVCLP  300
CAGLNCIKAS VRRYAPHWWL YRTGKRESAT TRPRRPQSPR LVRQFGPEHS ESWLTRVSPG  360
LPIIIVWPGG RLTGHRRRGL PKPKGLESDF CGIQYFYTKS KLAEIGFPGP LSVSCGRACH  420
SVQDTCGHRA GDGIIVSRCR LRNPAPLFHF TFTAHHSAIP CPGLALNPEQ SSATGPRHYA  480
SPIDTSAPTA TGDWPTPSAR VPPNRRPIGN GGFVSSPSSL FRLRSLSLSL SLSPSLPACM  540
EPGAPWRDPR QGYAYGFGSA MQIPLQQQRR PDAVAAGGVL KRSLGELERW QHQQNQQVAA  600
QQALYLRAVR QRTAAATDIA ALLGGTPSHR PMVVALIEQE LNTNTAPLAA RFTDACAHYG  660
AILDSLEATL GRDNAERTMP ESALAKKASN AVGREGSDRL ERCEVFGKWR ARFGMAGFRP  720
VALNPSIADQ VVARCGPTPP ALSMKTENGV LRIGWMGRVV TVASAWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-12	631	766	243	378	Protein SCARECROW
5b3h_A	4e-12	631	766	242	377	Protein SCARECROW
5b3h_D	4e-12	631	766	242	377	Protein SCARECROW