PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01355.1.g00220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 206aa MW: 22579.4 Da PI: 5.7354 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.8 | 5.3e-10 | 57 | 97 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri ++f Lr+l+P K++ +++Le+A++Y+k L Zmw_sc01355.1.g00220.1.sm.mk 57 ARERRHRISDRFRVLRSLVPGG-----SKMDTVSMLEQAIHYVKFL 97 699*****************95.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.313 | 48 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.42E-15 | 53 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.3E-13 | 54 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.41E-14 | 54 | 102 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.4E-13 | 54 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-7 | 57 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MDPYHYPNMH DPLGFPITHQ QPYIIHPAAA FSDTRGRGGG RRRPGAKLST DPQSVAARER 60 RHRISDRFRV LRSLVPGGSK MDTVSMLEQA IHYVKFLKAQ VSLHQAALMQ HEEGCNHELA 120 AAYSGVDEVI SASNGHDASD VAMQPLQLPV PEAASYAAMV ADQLELLDPW QMSGGSNELP 180 PLPSCVFVEE PATTCYSEEV DLLGSY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that seems to regulate organogenesis in postembryonic development. Involved in the regulation of shoot branching by controlling axillary meristem initiation. Functions in association with LAX2 to regulate the process of AM formation. Possesses transactivation activity in yeast (PubMed:21963665). {ECO:0000269|PubMed:13130077, ECO:0000269|PubMed:21963665}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105271.1 | 9e-75 | barren stalk 1 | ||||
Refseq | XP_020406751.1 | 9e-75 | transcription factor LAX PANICLE 1 | ||||
Swissprot | Q7XAQ6 | 2e-61 | LAX1_ORYSJ; Transcription factor LAX PANICLE 1 | ||||
TrEMBL | Q5MP56 | 2e-73 | Q5MP56_MAIZE; BHLH transcription factor | ||||
STRING | GRMZM2G397518_P01 | 4e-74 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8553 | 32 | 43 |