PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01354.1.g00180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 138aa MW: 15677 Da PI: 9.8884 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 67.6 | 1.7e-21 | 3 | 54 | 35 | 86 |
EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL++gD++vF+++ Zmw_sc01354.1.g00180.1.es.mkhc 3 LLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGDTIVFSHST 54 5789*********************************************764 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.521 | 1 | 69 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.0E-22 | 2 | 72 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.5E-18 | 3 | 53 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 9.42E-19 | 3 | 56 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.41E-17 | 6 | 53 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
GVLLNFEDGE GKVWRFRYSY WNSSQSYVLT KGWSRFVREK GLRAGDTIVF SHSTYGLEKQ 60 LFIDYKKTPT TTEPSVRSPL EKPKEARVAV RLFGVDIAGD GCQKRERPLE MALEQGQGFL 120 KKHCLVQHQS PALGAILL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 6e-29 | 1 | 66 | 51 | 115 | DNA-binding protein RAV1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004968155.1 | 2e-72 | AP2/ERF and B3 domain-containing protein Os01g0141000 | ||||
Swissprot | Q0DXB1 | 3e-55 | Y2641_ORYSJ; B3 domain-containing protein Os02g0764100 | ||||
Swissprot | Q9AWS0 | 6e-54 | Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000 | ||||
TrEMBL | K3XJ36 | 4e-71 | K3XJ36_SETIT; Uncharacterized protein | ||||
STRING | Si001909m | 6e-72 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Publications ? help Back to Top | |||
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