PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Zmw_sc01338.1.g00200.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 320aa MW: 34876.1 Da PI: 8.8931

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01338.1.g00200.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	106.6	3.1e-33	70	211	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgk 72 lp+G++F+Ptd+el+ e+L+ k++ + ++++ +i+ +i++++P++Lp v ++ +fF++ +k+y+tg+ Zmw_sc01338.1.g00200.1.am.mk 70 LPAGVKFDPTDQELI-EHLEGKARPDArgqlhplVDEFIpTIEGEnGICYTHPERLP-GVGKDGLIRHFFHRPSKAYTTGT 148 799**********.9999887767775542222223665557*******.555555677********** PP NAM 73 rknratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 rk+r+++ + +W++tgk+++v+s +g+l+g kk+Lv+y g+++k+ekt+Wvmh+y+l Zmw_sc01338.1.g00200.1.am.mk 149 RKRRKVHtdeeggETRWHKTGKTRPVFS-NGKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 211 744456555778********.999*******6657999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-38	62	230	IPR003441	NAC domain
PROSITE profile	PS51005	33.352	70	230	IPR003441	NAC domain
Pfam	PF02365	2.3E-15	71	211	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MTWCNSFNDV RAVENNLATA AGVAAAAARK QQQQTSSPRV NLIRTCPSCG HRAQYEQVQA 60 AATIQDLPGL PAGVKFDPTD QELIEHLEGK ARPDARGQLH PLVDEFIPTI EGENGICYTH 120 PERLPGVGKD GLIRHFFHRP SKAYTTGTRK RRKVHTDEEG GETRWHKTGK TRPVFSNGKL 180 KGYKKILVLY TNYGKQRKPE KTNWVMHQYH LGSDEEEKDG ELVVSKVFYQ TQPRQCGGGS 240 MSTAAKDAVP LAAPGAAGAT DQHQHDGNSS MLIKEASIVD FYSPAALIGY NQAAPNNRAA 300 ASAHLPNFEV HTAGAAGFGP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969491.1	0.0	NAC domain-containing protein 73
Swissprot	O49459	1e-121	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	K3XK78	0.0	K3XK78_SETIT; Uncharacterized protein
STRING	Si002301m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3075	37	86

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]