PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01330.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 806aa MW: 88818.6 Da PI: 6.378

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01330.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	393.1	3e-120	431	800	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 ++lL++cA+ v+++d + a +lL++++++as++gd qRla++f+++L+arla+++s++yk++++++ + ++ l+a++ Zmw_sc01330.1.g00130.1.am.mk 431 ETLLIHCAQSVATDDRRSAVELLKQIRQHASSNGDGDQRLAHCFANGLEARLAGNGSQIYKSFTMTRFA---CTDLLKAYQ 508 789*************************************************************999...9**** PP GRAS 83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleet 161 l+ ++P+ k+sh+ aNq+I++ave++++vHi+D++i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g ++++eet Zmw_sc01330.1.g00130.1.am.mk 509 LYLAACPFKKISHFFANQTIMNAVEKAKKVHIVDYGIYYGFQWPCLIQRLSTRPGGPPKLRITGIDTPQPGfrPTKRIEET 589 ***************************************************************************** PP GRAS 162 gerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvv 242 g+ L+++A++++vpfef++ +a+r +++++e+L+++++E l+Vn++++ ++l+desv es+r+ vL+++++++P+v+++ Zmw_sc01330.1.g00130.1.am.mk 590 GRYLKDYAQTFNVPFEFQA-IASRYQAVQIEDLHIEKDELLIVNCMFKFKTLMDESVVAESPRNMVLNTIRKMNPHVFIHG 669 ***************.7******************************************************** PP GRAS 243 eqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323 + ++n++ F+ rf eal +ysa+fd+le+++pr++e+r +E +l+gre+ nv++ceg er er et+++W+ r ++aG Zmw_sc01330.1.g00130.1.am.mk 670 IINGSYNAPFFVSRFREALFHYSAIFDMLETNIPRDNEQRLLIESALFGREAINVISCEGLERLERPETYKQWQVRNQRAG 750 ***************************************************************************** PP GRAS 324 FkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 Fk++p++++++k a+ +r +++d + +e++ +l++gWk+r L+++S W+ Zmw_sc01330.1.g00130.1.am.mk 751 FKQLPINQDIMKRAREKVRCYHKD-FIFDEDNRWLLQGWKGRILFALSTWK 800 ******************77.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	68.582	404	781	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-117	431	800	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 806 aa Download sequence Send to blast
MDAGMHELCT LLPGSKRDGH LPVYRQIGAA GAGASGFMMD ELEALLFMPP DGIASAASGG 60 GYLNVAPSIV VPPASTNRAS PPRGASAAPA AGQPDDSEAF SDIVLGYINR MLMAEDIDEK 120 FEHYPEHGAL LAAEKPFLEI LADQPASSGG SAVDSPDGSS VTTNSCSSLG SCGCAAAAPD 180 GLGAEGTSLL DFPTAPFLQP PQLYGDLSPD GSVVESGDAW PTELYQLRTN PLPETLLSQS 240 SSFGSSNGSG ATVPDGFESL LTSPGFMPVV GFTEFALQSQ QAMHFSRGLE EASRFLPDES 300 KLVIDLEKST SVPSLPSNVK EEKKFVEVKT EKPEVESAAH RGKKHFYGDD LDAEEGRCTK 360 HSALAIDTDH LVREMMDKVL LCNGETCSKG VKELREALQN EKHSHGGHGK GSGHGKGRGK 420 KQPKKEVVDL ETLLIHCAQS VATDDRRSAV ELLKQIRQHA SSNGDGDQRL AHCFANGLEA 480 RLAGNGSQIY KSFTMTRFAC TDLLKAYQLY LAACPFKKIS HFFANQTIMN AVEKAKKVHI 540 VDYGIYYGFQ WPCLIQRLST RPGGPPKLRI TGIDTPQPGF RPTKRIEETG RYLKDYAQTF 600 NVPFEFQAIA SRYQAVQIED LHIEKDELLI VNCMFKFKTL MDESVVAESP RNMVLNTIRK 660 MNPHVFIHGI INGSYNAPFF VSRFREALFH YSAIFDMLET NIPRDNEQRL LIESALFGRE 720 AINVISCEGL ERLERPETYK QWQVRNQRAG FKQLPINQDI MKRAREKVRC YHKDFIFDED 780 NRWLLQGWKG RILFALSTWK PDHRSS

Sequence ? help Back to Top

Protein Sequence Length: 806 aa Download sequence Send to blast

MDAGMHELCT LLPGSKRDGH LPVYRQIGAA GAGASGFMMD ELEALLFMPP DGIASAASGG  60
GYLNVAPSIV VPPASTNRAS PPRGASAAPA AGQPDDSEAF SDIVLGYINR MLMAEDIDEK  120
FEHYPEHGAL LAAEKPFLEI LADQPASSGG SAVDSPDGSS VTTNSCSSLG SCGCAAAAPD  180
GLGAEGTSLL DFPTAPFLQP PQLYGDLSPD GSVVESGDAW PTELYQLRTN PLPETLLSQS  240
SSFGSSNGSG ATVPDGFESL LTSPGFMPVV GFTEFALQSQ QAMHFSRGLE EASRFLPDES  300
KLVIDLEKST SVPSLPSNVK EEKKFVEVKT EKPEVESAAH RGKKHFYGDD LDAEEGRCTK  360
HSALAIDTDH LVREMMDKVL LCNGETCSKG VKELREALQN EKHSHGGHGK GSGHGKGRGK  420
KQPKKEVVDL ETLLIHCAQS VATDDRRSAV ELLKQIRQHA SSNGDGDQRL AHCFANGLEA  480
RLAGNGSQIY KSFTMTRFAC TDLLKAYQLY LAACPFKKIS HFFANQTIMN AVEKAKKVHI  540
VDYGIYYGFQ WPCLIQRLST RPGGPPKLRI TGIDTPQPGF RPTKRIEETG RYLKDYAQTF  600
NVPFEFQAIA SRYQAVQIED LHIEKDELLI VNCMFKFKTL MDESVVAESP RNMVLNTIRK  660
MNPHVFIHGI INGSYNAPFF VSRFREALFH YSAIFDMLET NIPRDNEQRL LIESALFGRE  720
AINVISCEGL ERLERPETYK QWQVRNQRAG FKQLPINQDI MKRAREKVRC YHKDFIFDED  780
NRWLLQGWKG RILFALSTWK PDHRSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-54	434	800	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004970541.1	0.0	scarecrow-like protein 9
TrEMBL	A0A1E5VF22	0.0	A0A1E5VF22_9POAL; Scarecrow-like protein 9
STRING	Pavir.Eb03680.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12518	31	37