PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01325.1.g00160.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 203aa    MW: 22225.3 Da    PI: 10.3863
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01325.1.g00160.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.83.5e-263588259
                                    --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                                    +Dgy+WrKYGqK vk+s+fpr    Ct ++C+vkk+vers++dp+vv++tYeg+H h+
  Zmw_sc01325.1.g00160.1.sm.mkhc 35 EDGYRWRKYGQKAVKNSPFPR----CTNNKCTVKKRVERSSDDPSVVITTYEGQHCHH 88
                                    8*******************6....******************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-271989IPR003657WRKY domain
SuperFamilySSF1182908.11E-232689IPR003657WRKY domain
PROSITE profilePS5081123.7892990IPR003657WRKY domain
SMARTSM007747.0E-323489IPR003657WRKY domain
PfamPF031061.9E-193588IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MYRRVVKPAP VKKGPKRARQ PRFAFMTKTE IDHLEDGYRW RKYGQKAVKN SPFPRCTNNK  60
CTVKKRVERS SDDPSVVITT YEGQHCHHTA SALSFQRGAG TAAHHFHSAA ATVALAEQMP  120
LVPGLPAQRR LYNSLLPVRP QSSPSSSETG VCTSALASSL QQHLNGNEML SRPSTSSSGA  180
PATSVEKGLL DDIVPHGAYY VPM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-212487774Probable WRKY transcription factor 4
2lex_A3e-212487774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690361.14e-73PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 57
SwissprotQ9C9834e-47WRK57_ARATH; Probable WRKY transcription factor 57
TrEMBLJ3LSZ93e-72J3LSZ9_ORYBR; Uncharacterized protein
STRINGOB03G41750.14e-73(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Jiang Y,Qiu Y,Hu Y,Yu D
    Heterologous Expression of AtWRKY57 Confers Drought Tolerance in Oryza sativa.
    Front Plant Sci, 2016. 7: p. 145
    [PMID:26904091]
  3. Jiang Y,Yu D
    The WRKY57 Transcription Factor Affects the Expression of Jasmonate ZIM-Domain Genes Transcriptionally to Compromise Botrytis cinerea Resistance.
    Plant Physiol., 2016. 171(4): p. 2771-82
    [PMID:27268959]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]