PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01325.1.g00100.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 413aa    MW: 44517.1 Da    PI: 6.7946
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01325.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.5e-30182238259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   +Dgy+WrKYGqK+ k++e prsYY+Ct +gCpvkk vers  d+ ++eitY+g+Hnh+
  Zmw_sc01325.1.g00100.1.am.mk 182 KDGYSWRKYGQKQLKDAESPRSYYKCTREGCPVKKVVERSF-DGFITEITYKGRHNHP 238
                                   8****************************************.***************8 PP
2WRKY103.31.4e-32313371159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDgy+WrKYGqK+vkg++ prsYY+Ct  +C+v+k++er+++dp++v +tY g+Hnh+
  Zmw_sc01325.1.g00100.1.am.mk 313 LDDGYRWRKYGQKVVKGNPRPRSYYKCTADNCNVRKQIERASTDPRCVLTTYAGRHNHD 371
                                   59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-27178240IPR003657WRKY domain
SuperFamilySSF1182904.32E-24180240IPR003657WRKY domain
SMARTSM007742.8E-32181239IPR003657WRKY domain
PfamPF031062.0E-23182238IPR003657WRKY domain
PROSITE profilePS5081123.066183240IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-33298373IPR003657WRKY domain
SuperFamilySSF1182907.59E-28306373IPR003657WRKY domain
PROSITE profilePS5081135.221308373IPR003657WRKY domain
SMARTSM007744.1E-35313372IPR003657WRKY domain
PfamPF031063.5E-24314371IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MDDRRGRGGD AMRHGPFASA QERVFDGGGA GPSFGGDFDQ GSSYMELLSA GVNPQPLPPL  60
PQWAVEEVAA APAINLVPQS FSTANFTSSS SSYQHPASFA AVSPLSYSTQ PYAPLYLQQT  120
DLPPTQWPPR PAIMSAASSY LPPNFSFLPA AAHNNQLQQH VVHPRGGAGG QPSPAVIEQP  180
AKDGYSWRKY GQKQLKDAES PRSYYKCTRE GCPVKKVVER SFDGFITEIT YKGRHNHPRP  240
PQRGNDGDVP AGIIAEEALD GQSDHDDDED VLHEDHDGDE GHRAMGADGT VAGQRVVKKP  300
KIILQTPSDV DLLDDGYRWR KYGQKVVKGN PRPRSYYKCT ADNCNVRKQI ERASTDPRCV  360
LTTYAGRHNH DPPGQGPDAA AAPGGASAHH PAAAGGSGMF QQTGGSRQLK EES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-32183373877Probable WRKY transcription factor 4
2lex_A1e-32183373877Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020402538.11e-147probable WRKY transcription factor 26
TrEMBLA0A1E5VEH51e-152A0A1E5VEH5_9POAL; Putative WRKY transcription factor 58
STRINGPavir.J00850.1.p1e-144(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28753236