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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01311.1.g00080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 821aa MW: 88571 Da PI: 8.9456 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 3.9e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv +v+++G+g+W++++ g+ R+ k+c++rw +yl Zmw_sc01311.1.g00080.1.am.mk 14 KGPWTPEEDLMLVSYVQEHGPGNWRAVPTNTGLMRCSKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.1 | 5.7e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++l++++ +lG++ W++Ia++++ Rt++++k++w+++l Zmw_sc01311.1.g00080.1.am.mk 67 RGNFTDQEEKLIIHLQVLLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.935 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.91E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.5E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.21E-11 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 65 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.831 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.9E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.26E-11 | 69 | 112 | No hit | No description |
ProDom | PD125774 | 7.0E-24 | 732 | 811 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.8E-27 | 752 | 804 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.9E-20 | 753 | 802 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.361 | 754 | 803 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 821 aa Download sequence Send to blast |
MGRPPCCDKV GVKKGPWTPE EDLMLVSYVQ EHGPGNWRAV PTNTGLMRCS KSCRLRWTNY 60 LRPGIKRGNF TDQEEKLIIH LQVLLGNRWA AIASYLPERT DNDIKNYWNT HLKKKLKKMQ 120 AGESGGGDQD GVRVSESAGA GDRVGGEKRP TVHKGQWERR LQTDIHTARQ ALREALSLEP 180 SPPAKMAPLP TPAGSATYAS SAENIARLLE GWLRPGSGCG KGPETSGSTF TTGTTQQRPQ 240 CSGEGAASAS ESHSGGTAAM AVQTPECSTE TSKMVGAAGA GAPPAFSMLE NWLLDDGMAH 300 GEVGLIDVVP LGDPSMARCT GAGQWDCHGD ACMFLLLLHG YARVKQSQPQ EKIGKEKSES 360 KEQRNKRPGR PGRAECNAMR PWKRTGTGFN AGSVGCRFCR APLSFSPCLL SPACSQEDSG 420 RPSPGRHCPP APCIMQACGG TPNLIQSSWQ AEELRVMGLN AEQKGHRRGV NARPTHDPAR 480 QLRPYTVYSY YSAASEESRA GSSFIIQFSA LLCLFSFTMN VNVRLGGSNG LRNVCVRASG 540 RRGKEGRTHA VEGQWRVPSA HLVGGLNAPA LPAPSLIDLK ALSPLITAAP LRSRNGMELN 600 GPSEADPGDG IRRRRDGETS APPTDKRART YCCRPAGSVR SIDRNSRGAV GVRSGTVRSI 660 LSDRIEAIGA RYERPAVASP TRRISPVSHD DVGGGGGDSY LPVVHSEQGL HSPCAETRLW 720 LAGWEEEGKL TMKRLLILRR CEPIVRFTCC SVRYGECRRN HAATTGGYSV DGCREFIAEG 780 EEGTGGALKC AACGCHRSFH RRVQVYEVSW DYAASDSSST E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 3e-25 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-25 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00395 | DAP | Transfer from AT3G47600 | Download |
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Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 |