PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01304.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 651aa    MW: 68772.3 Da    PI: 4.6225
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01304.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS462.52.5e-1412706471374
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                                   lv++Ll+cAeav+++++++a+al++++  las++g +m+++aayf eALa+r++r        ++p ++s  +  ++++a+
  Zmw_sc01304.1.g00040.1.sm.mk 270 LVHALLACAEAVQQENFSAAEALVKQIPMLASSQGGAMRKVAAYFGEALARRVYR--------FRPAADS--SLLDAAFAD 340
                                   689****************************************************........3333333..344444444 PP

                          GRAS  82 kl...fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeele 159
                                    l   f+e +P+lkf+h+taNqaIlea++g++rvH++Df+i+qG+QWpaLlqaLa Rp+gpps+R+Tgvg+p+++++++l+
  Zmw_sc01304.1.g00040.1.sm.mk 341 LLhahFYESCPYLKFAHFTANQAILEAFAGCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQPDETDALQ 421
                                   33445**************************************************************************** PP

                          GRAS 160 etgerLakfAeelgvpfefnvlvakrledleleeLrvkp......gEalaVnlvlqlhrlldesvsleserdevLklvksl 234
                                   ++g++La+fA++++v+f+++ lva +l+dle+ +L+ +        E++aVn+v+++hrll+++++le+    vL +v+ +
  Zmw_sc01304.1.g00040.1.sm.mk 422 QVGWKLAQFAHTINVDFQYRGLVAATLADLEPFMLQPEGeerddePEVIAVNSVFEMHRLLAQPGALEK----VLGTVRAV 498
                                   ***********************************54434455669***********************....******** PP

                          GRAS 235 sPkvvvvveqeadhnsesFlerflealeyysalfdsleak.......lpres.eerikvErellgreivnvvacegaerre 307
                                   +Pk+v+vveqea+hns+sFl+rf+++l+yys++fdsle +        p+++  +++++++++lgr+i+nvvacegaer e
  Zmw_sc01304.1.g00040.1.sm.mk 499 RPKIVTVVEQEANHNSGSFLDRFTQSLHYYSTMFDSLEGGgsgqsdaSPAAAaGTDQVMSEVYLGRQICNVVACEGAERME 579
                                   *************************************888667666533333699************************** PP

                          GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   rhetle+Wr r+++aGF+p++l+++a+ qa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaWr
  Zmw_sc01304.1.g00040.1.sm.mk 580 RHETLEQWRGRFGRAGFEPLHLGSNAYRQASTLLALFAgGDGYRVEEKDGCLTLGWHTRPLIATSAWR 647
                                   *******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120412.5E-3674148IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011296.7E-3374154No hitNo description
PROSITE profilePS5098567.736244626IPR005202Transcription factor GRAS
PfamPF035148.7E-139270647IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006808Biological Processregulation of nitrogen utilization
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0010233Biological Processphloem transport
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MAATNPTIDP ALCACCCDGA ARPHLQSNTV ASPEITKREY QEAGGSSGGG SSDLGSFEDK  60
MMVVPAAEQD EEVDELLAAL GYKVRSSDMA DVAQKLEQLE MAMGMGGVTG AAADDGFVSH  120
LATDTVHYNP SDLSSWVESM LSELNAPPQP LPPAPVPPTP LLASASSTVP SVGGGGYFDP  180
PPPVDSSSST YALKPIPSPV AAPADPSTDS APEPKRMRTG GDSASSSSSS SSSLGGGGAR  240
ISVVEAAPPA SNAPAVPVVM VDTQEAGIRL VHALLACAEA VQQENFSAAE ALVKQIPMLA  300
SSQGGAMRKV AAYFGEALAR RVYRFRPAAD SSLLDAAFAD LLHAHFYESC PYLKFAHFTA  360
NQAILEAFAG CRRVHVVDFG IKQGMQWPAL LQALALRPGG PPSFRLTGVG PPQPDETDAL  420
QQVGWKLAQF AHTINVDFQY RGLVAATLAD LEPFMLQPEG EERDDEPEVI AVNSVFEMHR  480
LLAQPGALEK VLGTVRAVRP KIVTVVEQEA NHNSGSFLDR FTQSLHYYST MFDSLEGGGS  540
GQSDASPAAA AGTDQVMSEV YLGRQICNVV ACEGAERMER HETLEQWRGR FGRAGFEPLH  600
LGSNAYRQAS TLLALFAGGD GYRVEEKDGC LTLGWHTRPL IATSAWRLTA A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6127764626378Protein SCARECROW
5b3h_A3e-6127764625377Protein SCARECROW
5b3h_D3e-6127764625377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001354393.10.0DELLA protein DWARF8
SwissprotQ9ST480.0DWRF8_MAIZE; DELLA protein DWARF8
TrEMBLH9A2920.0H9A292_ERATE; Reduced height-2
STRINGGRMZM2G144744_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Publications ? help Back to Top
  1. Tenaillon MI, et al.
    Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.).
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6
    [PMID:11470895]