PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01296.1.g00070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 267aa MW: 27968.3 Da PI: 8.0009 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.5 | 0.0001 | 87 | 109 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C + F ++ L H++ H Zmw_sc01296.1.g00070.1.am.mk 87 FKCNYCQRKFYTSQALGGHQNAH 109 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.56E-7 | 83 | 114 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.0E-4 | 85 | 113 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.572 | 87 | 114 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 89 | 109 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MGKGSSSRTE SMEVQAVAQV EDGEEVRGME QAPSQELDLL GSLGSEPMVN AMQPAEEKGK 60 EKARVEEEEK PAMATIAGGG GQKKRAFKCN YCQRKFYTSQ ALGGHQNAHK RERSLAKRGA 120 AGAAAAAAAA AGRGIYGAGD PFMPPHHLRF PHVWPYSAGG RPSFLGLGRG TYGVHQGWMA 180 QGGQPSVPGL ACNPGADRAS VYAPHAYSYT AASRSTTAGP TILDSGMAGL RWASVVSCAA 240 TVGDQNIAHE AKQQEEAEGT LDLNLKL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822315.1 | 2e-82 | zinc finger protein GIS3-like | ||||
TrEMBL | A0A2S3I1W9 | 4e-81 | A0A2S3I1W9_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7D5Q3 | 4e-81 | A0A2T7D5Q3_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6RLA4 | 3e-81 | A0A3L6RLA4_PANMI; Uncharacterized protein | ||||
STRING | Si014969m | 3e-79 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13064 | 22 | 30 |