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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01288.1.g00070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 239aa MW: 25248.3 Da PI: 4.8366 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.6 | 6.3e-18 | 32 | 81 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr ++ +g+Wv+eIr p ++++r++lg++ tae Aa+a++aa ++l+g Zmw_sc01288.1.g00070.1.sm.mk 32 QYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 81 69****998.**********9...336************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.9E-30 | 31 | 89 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.575 | 32 | 89 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.58E-17 | 32 | 91 | No hit | No description |
SMART | SM00380 | 4.0E-34 | 32 | 95 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-19 | 32 | 90 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.3E-11 | 32 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-9 | 33 | 44 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-9 | 55 | 71 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MVKNAQLQAE AAINGAAGNA AAARQQHGGK RQYKGVRMRS WGSWVSEIRA PNQKTRIWLG 60 SYSTAEAAAR AYDAALLCLK GSAADLNFPV HLPFHIPAAA MSPKSIQRVA AAAAANACSP 120 LQQGAGPASY PAAAAAINDA ASHPPCGYGV DSASWGVSSP ETVITDHQYC ETMMARDDGT 180 MGDVDYGSLA DIEAFLFQSP KCMEYGMMDP CSTFFAPAPM AADWEEEGEI DLWSFSSCN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-14 | 26 | 89 | 11 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002454612.1 | 4e-93 | ethylene-responsive transcription factor ERF014 | ||||
TrEMBL | C5XSW4 | 9e-92 | C5XSW4_SORBI; Uncharacterized protein | ||||
STRING | Sb04g034290.1 | 1e-92 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3197 | 34 | 69 |