PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01283.1.g00170.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 693aa    MW: 79900.6 Da    PI: 7.6129
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01283.1.g00170.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.6e-08284311126
                                     --S---SGGGGTS..--TTTTT-SS-SS CS
                         zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                                     +k ++C  ++r+   tC++G+ C+F+H+
  Zmw_sc01283.1.g00170.1.sm.mkhc 284 WKAAICGEYMRSRykTCSHGAACNFIHC 311
                                     7889***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.70.3301.8E-11234279IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549283.44E-9235279IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018484.0E-15238260IPR009145U2 auxiliary factor small subunit
PRINTSPR018484.0E-15265289IPR009145U2 auxiliary factor small subunit
PROSITE profilePS5010310.756283313IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5284311IPR000571Zinc finger, CCCH-type
PRINTSPR018484.0E-15303315IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MSAPVAETAD WSGEAGPHAA APATRREKLK ERKKERRRRA RREAAARARE AAEAEAAVDP  60
EEETRLLELE LAQAAEESDQ ARQAFEEAER RWLEAAAARA AKRAAKAAEE EEARAAEASS  120
RHKDGDGNKL EEDDEWEYVE EGPAEIIWQG NEIIVKKKKV KVPKGVKEKL PTQESENWLN  180
GSQEERPTSN PLPPKSVSAV AQRREPSLSA QEVLEKVAHE TPNFGTEQKL STGYLYWNGS  240
FHLRGNVYVH YKSLDSALLA HNSMNGRYFA GKQISCEFVA LTKWKAAICG EYMRSRYKTC  300
SHGAACNFIH CFRNPGGDYE WSDWDNPPPK YWIRKMTALF GLSADTNSLS TTPDFECSQG  360
SDRKRLKSSG DRYVSRRLKD EDGYKQRFCR DYSHSMEEHC SRSMKNEQSR HRRDPHAVDK  420
HRSREIEGNK GKYPQNGRES HRHLQSHRHL HEERYKSDHS GREKGDDGKI RSRKNRSDQQ  480
GYLEPRSSDW HSDYTDLSNS PSGRSTSRYV DYKRRRQSTE DNNTGKHSSF VHRSGEEEDR  540
TKRHSSRYSE DDYYDKKNDY YDEKNDGRGK TGKGGNHHDD SDDRWVATNS DVDSDYEIYQ  600
RSSSNSSNSE QKDEAHSDAE ARHQRSLMEA KDHKSRRRHS EHRQYCDTEE DTSYSDTTDS  660
STDSWGRRSR SSEEKVSKHR SRKNIDQSRE KAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13542RRRRARRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808935.11e-145zinc finger CCCH domain-containing protein 16
SwissprotQ6YVX91e-144C3H16_ORYSJ; Zinc finger CCCH domain-containing protein 16
TrEMBLA0A3L6QK651e-176A0A3L6QK65_PANMI; Zinc finger CCCH domain-containing protein 16
STRINGOPUNC02G18540.11e-158(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92961317
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]