PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01277.1.g00250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 262aa MW: 27494 Da PI: 8.6205 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00045 | 92 | 114 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ CgksF + L H +H Zmw_sc01277.1.g00250.1.am.mk 92 FKCSVCGKSFGSYQALGGHKTSH 114 89********9998888887776 PP | |||||||
2 | zf-C2H2 | 12.5 | 0.00043 | 165 | 187 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F++ L H r+H Zmw_sc01277.1.g00250.1.am.mk 165 HRCSICHKEFPTGQALGGHKRKH 187 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.011 | 92 | 114 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 3.68E-9 | 92 | 114 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 0.001 | 92 | 115 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.4E-12 | 92 | 115 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 12.321 | 92 | 119 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 94 | 114 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.68E-9 | 160 | 187 | No hit | No description |
Pfam | PF13912 | 1.2E-12 | 164 | 189 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.043 | 165 | 187 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.058 | 165 | 187 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 167 | 187 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MSSAMELLQA VLPEHHQKEK EVALTTSSSA ATSGDEGAHV PQGWAKRKRS RRQRSEEENL 60 ALCLLMLSRG VHHRVQAPPP PLPEPLATAA EFKCSVCGKS FGSYQALGGH KTSHRVKQPA 120 AAAPLVEAPV PTTAVAPPVS ELREPATSST VASSDGTTAT TGRVHRCSIC HKEFPTGQAL 180 GGHKRKHYDG GVGSGAASAA AAETSEVGSS GNGSSAARAF DLNLPAAPEL VWRCAKPGNM 240 REDDEEVQSP LAFKKPRLLM TA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008644480.1 | 1e-107 | zinc finger protein 1 | ||||
Swissprot | Q42430 | 3e-99 | ZFP1_WHEAT; Zinc finger protein 1 | ||||
TrEMBL | A0A0Y0SZ20 | 0.0 | A0A0Y0SZ20_9POAL; C2H2-type zinc finger protein | ||||
STRING | GRMZM2G035103_P01 | 1e-106 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |