PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01255.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 160aa    MW: 17476.8 Da    PI: 10.7659
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01255.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.62.3e-162170255
                           AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                  +y+GVr ++ + r++AeIrd      k++r++lg+f+ + eAa a+++a++ l+g
  Zmw_sc01255.1.g00020.1.sm.mk 21 HYRGVRKRP-WDRYAAEIRDtR----KKTRVWLGTFDIPVEAALAYDRAARVLRG 70
                                  7********.**********33....36***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.56E-272080No hitNo description
SMARTSM003806.4E-322184IPR001471AP2/ERF domain
PROSITE profilePS5103219.9282178IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-202179IPR016177DNA-binding domain
PfamPF008478.8E-122170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-292179IPR001471AP2/ERF domain
PRINTSPR003676.3E-112233IPR001471AP2/ERF domain
PRINTSPR003676.3E-116080IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MMSRGGGQGG ARGGGGRRDA HYRGVRKRPW DRYAAEIRDT RKKTRVWLGT FDIPVEAALA  60
YDRAARVLRG AKARTNFPDH DVHHSQHLHK LPLRPVPLGG VDVSCSSPWH FIYFQQAPPA  120
VPAVPLPHRA DGAPPSTVLE FGSGQGRGSL PFDLNEAPSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-182178563ATERF1
3gcc_A4e-182178563ATERF1
5wx9_A4e-18878372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172360.12e-52ethylene-responsive transcription factor 12-like
TrEMBLA0A3B6H0L19e-54A0A3B6H0L1_WHEAT; Uncharacterized protein
STRINGBRADI2G52380.13e-51(Brachypodium distachyon)