PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01237.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 121aa MW: 13779.2 Da PI: 11.5305 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.5 | 3.5e-28 | 55 | 103 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien++ rqvtfskRr g++KKA+EL +LCdaev +++fsstg+lye++ Zmw_sc01237.1.g00050.1.am.mk 55 RIENTTSRQVTFSKRRSGLFKKAKELAILCDAEVGLVVFSSTGHLYEFA 103 8***********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.3E-30 | 19 | 105 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-23 | 48 | 68 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.086 | 54 | 106 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.32E-24 | 54 | 106 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.4E-27 | 55 | 102 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-23 | 68 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-23 | 83 | 104 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
MPRFLTWLVV ASRADRLICA RPKLSCLCRA HGQRRPRRPH AVKEQPRKKA NPPNRIENTT 60 SRQVTFSKRR SGLFKKAKEL AILCDAEVGL VVFSSTGHLY EFANTRFVLL VSSCFLAKLD 120 V |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269|PubMed:23463009}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820845.1 | 1e-24 | MADS-box transcription factor 23-like isoform X1 | ||||
Swissprot | Q6Z6W2 | 1e-23 | MAD57_ORYSJ; MADS-box transcription factor 57 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP71978 | 2 | 2 |
Publications ? help Back to Top | |||
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