PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01230.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 403aa    MW: 44689.3 Da    PI: 8.4672
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01230.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.3e-1898147155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  Zmw_sc01230.1.g00030.1.sm.mk  98 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 147
                                   78*******************......55************************998 PP
2AP2378.2e-12195245155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+++GV+++k  g+W+A+I         +k+++lg + t+ eAa+ +++a+ k +g
  Zmw_sc01230.1.g00030.1.sm.mk 195 SRFRGVTQHK-CGKWEARIGQlM----GKKYVYLGLYETEMEAAQVYDKAAIKCFG 245
                                   789*******.7******77733....25**********77**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-1698156IPR016177DNA-binding domain
PfamPF008473.1E-1098147IPR001471AP2/ERF domain
SMARTSM003801.5E-3099161IPR001471AP2/ERF domain
CDDcd000188.91E-1199154No hitNo description
PROSITE profilePS5103217.79499155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-1799155IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-16195253IPR016177DNA-binding domain
CDDcd000182.05E-23195255No hitNo description
PfamPF008475.7E-7195243IPR001471AP2/ERF domain
PROSITE profilePS5103214.908196253IPR001471AP2/ERF domain
SMARTSM003802.0E-31196259IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-15196253IPR001471AP2/ERF domain
PRINTSPR003676.1E-5197208IPR001471AP2/ERF domain
PRINTSPR003676.1E-5235255IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MADAKRAFHF DGVDDGVARE EGGARRGEGA GMIFGFPVVP GPTAVTQQLF PAAVPARQHQ  60
QQVMEQCHAV AAAATAAAEP WARSSLRKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG  120
KQVYLGGFDT AQAAARAYDQ AAIKFRGMSA DINFSLDDYK DDIKKHCSCQ MNSFSKEEFI  180
QVLRRQGAGF VRGSSRFRGV TQHKCGKWEA RIGQLMGKKY VYLGLYETEM EAAQVYDKAA  240
IKCFGKEAVT NFDPHAYHSE PQLQSWDGEL DLELSLGCAS GERGGDHTTV AGEAFNPTPG  300
RQRTSLTKNH GHRLCFMPEN QLELPEEDET IAGYLHRSIR ATPLPSPATP PVRGALGLQY  360
HRVDDLAPFP SSRSTAMHML QMLARYAQNA APVPFDMSCD YAR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642711.11e-132ethylene-responsive transcription factor RAP2-7
SwissprotA0A0N7KMH01e-133AP24_ORYSJ; APETALA2-like protein 4
TrEMBLA0A3L6RYR21e-137A0A3L6RYR2_PANMI; Uncharacterized protein
STRINGLPERR06G18460.11e-134(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118213439
Publications ? help Back to Top
  1. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  2. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]