PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01212.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 733aa MW: 78515 Da PI: 10.2431

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01212.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	109.7	1.5e-34	211	271	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ al+cprC++tntkfCyynny++ qPry+CkaC+ryWt+GG+ rn+PvGg++rk+ k+s Zmw_sc01212.1.g00130.1.am.mk 211 PDVALPCPRCHATNTKFCYYNNYNMLQPRYLCKACKRYWTHGGSQRNIPVGGASRKQSKRS 271 567899**************************************************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-20	204	262	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-29	214	269	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27	215	269	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	217	253	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence Send to blast
MLWSWTDPDA DTRRPVPSHH PHALPPYHVY GSAAVTLGIQ MPLRSLNIGA REQHKHQRNN 60 TARLLVEQAV GMLPPGCTVD ALQGARSTRT SAVLPCRASC LHGNSVSISI SSCMDRVLAD 120 FYPLPPHRPL SPLLDFLVVL SPRRVQYKME GNLFCGSEEK MTNSKKSNTS AGASSAHSNN 180 IQQEARNTRQ ARAARQQVAA NAGERRPRPQ PDVALPCPRC HATNTKFCYY NNYNMLQPRY 240 LCKACKRYWT HGGSQRNIPV GGASRKQSKR SSASLSLPAA ASSSFVINKE LQQQLLPAAP 300 MIEPAADFNV FPSFMSTGFE HHGNQLPFSP APAPLPLPTL LPPAPVLAPD AGTPSFLDML 360 RGGFLDYQTN CFYAPATPST GMEAPPPLPF GGAAQPGVAG GRQGGGAAPT GGHVDATAAG 420 QGAAWPKPQG RTPSQPFLSP SRHIVAVRAS FFSTPPPSPL SALDPTPPRT ATAQTSPSAV 480 SLPSARHSLC SLSPTCVLYR TSAGRCRAHP SPPPNPSPGL CTTPPLASLV VPYARGRGVH 540 SALLVPVVSS LPRQSVNRIG CGIDGSGFER QLGTVVAACS GRGVARLSLL ACTPVHTRAL 600 PALHPHSCAR LSSYQLVASV EAGGRRIDKA NSYLVDDEFS SQQEGSRLIW EQEIKGLQTA 660 SQTDRTQDVS TIGGIRHQEP KPRSTESRTC GDFLNTAKRS SGNRRPARIS TTEKKPDFSF 720 SNFKFKTEWT SSR

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence Send to blast

MLWSWTDPDA DTRRPVPSHH PHALPPYHVY GSAAVTLGIQ MPLRSLNIGA REQHKHQRNN  60
TARLLVEQAV GMLPPGCTVD ALQGARSTRT SAVLPCRASC LHGNSVSISI SSCMDRVLAD  120
FYPLPPHRPL SPLLDFLVVL SPRRVQYKME GNLFCGSEEK MTNSKKSNTS AGASSAHSNN  180
IQQEARNTRQ ARAARQQVAA NAGERRPRPQ PDVALPCPRC HATNTKFCYY NNYNMLQPRY  240
LCKACKRYWT HGGSQRNIPV GGASRKQSKR SSASLSLPAA ASSSFVINKE LQQQLLPAAP  300
MIEPAADFNV FPSFMSTGFE HHGNQLPFSP APAPLPLPTL LPPAPVLAPD AGTPSFLDML  360
RGGFLDYQTN CFYAPATPST GMEAPPPLPF GGAAQPGVAG GRQGGGAAPT GGHVDATAAG  420
QGAAWPKPQG RTPSQPFLSP SRHIVAVRAS FFSTPPPSPL SALDPTPPRT ATAQTSPSAV  480
SLPSARHSLC SLSPTCVLYR TSAGRCRAHP SPPPNPSPGL CTTPPLASLV VPYARGRGVH  540
SALLVPVVSS LPRQSVNRIG CGIDGSGFER QLGTVVAACS GRGVARLSLL ACTPVHTRAL  600
PALHPHSCAR LSSYQLVASV EAGGRRIDKA NSYLVDDEFS SQQEGSRLIW EQEIKGLQTA  660
SQTDRTQDVS TIGGIRHQEP KPRSTESRTC GDFLNTAKRS SGNRRPARIS TTEKKPDFSF  720
SNFKFKTEWT SSR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	399	405	GGRQGGG

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22474	3	7