PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01212.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 464aa MW: 50619.1 Da PI: 6.7768

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01212.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26	1.6e-08	59	87	1	25
--S---SGGGGTS....--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartG....tCkyGdrCkFaH 25 +kt+lC++f+r G C++G++C++aH Zmw_sc01212.1.g00050.1.sm.mkhc 59 WKTSLCSYFRRHGaaaqGCSHGETCRYAH 87 8**************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	3.2E-12	54	95	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.51E-6	56	94	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0019	58	89	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.681	58	90	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.8E-6	59	87	IPR000571	Zinc finger, CCCH-type
CDD	cd00590	9.78E-4	136	179	No hit	No description
Gene3D	G3DSA:3.30.70.330	8.8E-5	140	186	IPR012677	Nucleotide-binding alpha-beta plait domain
SuperFamily	SSF54928	3.43E-5	144	207	IPR012677	Nucleotide-binding alpha-beta plait domain
SuperFamily	SSF53335	1.83E-9	234	260	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
SuperFamily	SSF53335	1.83E-9	292	385	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000166	Molecular Function	nucleotide binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MEEAKAQPPP PQQEQPELAG EKRKREDEGS PDAYPEEAPA ASAGGDDAPR AGGARHPMWK 60 TSLCSYFRRH GAAAQGCSHG ETCRYAHTEE ELRPRPDGTW DPTSDRAKKL RKDAEEAQEE 120 EVVTLDEQSL DKCLGISYAT AKKKKGMTVG FVTFESIEQL IKAVQVLKEN PSGGREIKIA 180 DANRRSHKKL PVDRPISDNG TTTGNGSAPP TGAGEKYAPE AAGSSKKSAR DAVTPLAHMS 240 YNDQLEHKKH TMAQILKRLT RNARKACPPA IPLPNWVYKS KEIGGLPCIL EGILESPVVN 300 GYRNKCEFSV GYSLEGKKTV GFMLGNFREG VTAVEEPVNC PNVSEISCKY ALMFQEFLQS 360 SSLPLWSRID NSGFWRQFTV REGRSPSQSD ASQNAESQIS EVMLIVQVCS TGVDEALMKE 420 EFDKLSAALQ LGAATCSPPL PLTTIVVQVS MPNGFRAMIS VHVS

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MEEAKAQPPP PQQEQPELAG EKRKREDEGS PDAYPEEAPA ASAGGDDAPR AGGARHPMWK  60
TSLCSYFRRH GAAAQGCSHG ETCRYAHTEE ELRPRPDGTW DPTSDRAKKL RKDAEEAQEE  120
EVVTLDEQSL DKCLGISYAT AKKKKGMTVG FVTFESIEQL IKAVQVLKEN PSGGREIKIA  180
DANRRSHKKL PVDRPISDNG TTTGNGSAPP TGAGEKYAPE AAGSSKKSAR DAVTPLAHMS  240
YNDQLEHKKH TMAQILKRLT RNARKACPPA IPLPNWVYKS KEIGGLPCIL EGILESPVVN  300
GYRNKCEFSV GYSLEGKKTV GFMLGNFREG VTAVEEPVNC PNVSEISCKY ALMFQEFLQS  360
SSLPLWSRID NSGFWRQFTV REGRSPSQSD ASQNAESQIS EVMLIVQVCS TGVDEALMKE  420
EFDKLSAALQ LGAATCSPPL PLTTIVVQVS MPNGFRAMIS VHVS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824350.1	0.0	zinc finger CCCH domain-containing protein 24
Swissprot	Q8L7S3	1e-125	C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBL	A0A3L6QAX3	0.0	A0A3L6QAX3_PANMI; Zinc finger CCCH domain-containing protein 24
STRING	OS04T0105000-01	0.0	(Oryza sativa)
STRING	Sb06g000450.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8493	31	31

Publications ? help Back to Top
Wang Y, et al. Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis. BMC Plant Biol., 2017. 17(1): p. 261 [PMID:29268705]