PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01206.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 417aa MW: 44629.5 Da PI: 5.4559

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01206.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.2	1.1e-30	201	259	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+++Hnh+ Zmw_sc01206.1.g00050.1.am.mk 201 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPSMLVITYTSDHNHP 259 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.2E-31	195	261	IPR003657	WRKY domain
PROSITE profile	PS50811	32.742	195	261	IPR003657	WRKY domain
SuperFamily	SSF118290	4.45E-26	198	261	IPR003657	WRKY domain
SMART	SM00774	6.3E-37	200	260	IPR003657	WRKY domain
Pfam	PF03106	1.4E-25	202	259	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MCDFFWPSLA DEGDLADVVR ASLQQLPAAA TPASATELVS ADAHGHLPAE EVERFLPTHG 60 VSCRGNHDHG DEVHLQPQWQ LVHGNGMGVT VGSSGGGGSC DPLLLHSSPS YPLLEPQQTE 120 GLIRHVMSGP TPQLLGVGEG DCDVAALEMD EQGLDMAMDP HAPAIKRRKS QTKKVVCIPA 180 PTAAPPGVGG RPSTSGEVVP SDLWAWRKYG QKPIKGSPYP RGYYRCSSSK GCSARKQVER 240 SRTDPSMLVI TYTSDHNHPW PTQRNVLAGS TRPAAAAKSQ HSTAATVPPP PTRHHHTIGT 300 VGDSATSSST GDNNVHQQQV PKQEVLDVMD HPMPEQGAAA VHDLDMFAET DGALNIMQTF 360 NFNPQKQQQQ QQLATAADGD DDDLLQDDKQ QLLDPFSFNF FDWVGASFGI GDANKGG

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MCDFFWPSLA DEGDLADVVR ASLQQLPAAA TPASATELVS ADAHGHLPAE EVERFLPTHG  60
VSCRGNHDHG DEVHLQPQWQ LVHGNGMGVT VGSSGGGGSC DPLLLHSSPS YPLLEPQQTE  120
GLIRHVMSGP TPQLLGVGEG DCDVAALEMD EQGLDMAMDP HAPAIKRRKS QTKKVVCIPA  180
PTAAPPGVGG RPSTSGEVVP SDLWAWRKYG QKPIKGSPYP RGYYRCSSSK GCSARKQVER  240
SRTDPSMLVI TYTSDHNHPW PTQRNVLAGS TRPAAAAKSQ HSTAATVPPP PTRHHHTIGT  300
VGDSATSSST GDNNVHQQQV PKQEVLDVMD HPMPEQGAAA VHDLDMFAET DGALNIMQTF  360
NFNPQKQQQQ QQLATAADGD DDDLLQDDKQ QLLDPFSFNF FDWVGASFGI GDANKGG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	5e-24	169	262	2	80	Disease resistance protein RRS1
5w3x_D	5e-24	169	262	2	80	Disease resistance protein RRS1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008658838.1	1e-115	probable WRKY transcription factor 35
TrEMBL	A0A1E5W3V0	1e-116	A0A1E5W3V0_9POAL; Putative WRKY transcription factor 35
STRING	GRMZM2G383594_P01	1e-114	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11847	30	39