PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01201.1.g00120.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 782aa MW: 84168.1 Da PI: 7.5945

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01201.1.g00120.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.4e-05	85	107	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Zmw_sc01201.1.g00120.1.am.mk 85 FVCEICHKGFQRDQNLQLHRRGH 107 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.05E-6	84	107	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.3E-4	84	107	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.637	85	107	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	87	107	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.5E-4	157	189	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.05E-6	164	189	No hit	No description
SuperFamily	SSF53474	4.19E-39	506	779	IPR029058	Alpha/Beta hydrolase fold
Gene3D	G3DSA:3.40.50.1820	7.8E-61	508	781	IPR029058	Alpha/Beta hydrolase fold
Pfam	PF12697	7.4E-18	512	772	IPR000073	Alpha/beta hydrolase fold-1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 782 aa Download sequence Send to blast
MSAAEEELLQ QRRYRVIKPF MGSPPAPGMG NDDDGDLQPV TAGTSEPPPA GPPAAKKKRS 60 LPGTPDPTAE VIALSPKTLM ATNRFVCEIC HKGFQRDQNL QLHRRGHNLP WKLRQRGGGG 120 GGADGGGPPR KRVYVCPELS CVHHNPARAL GDLTGIKKHY CRKHGEKKWK CERCAKRYAV 180 QSDWKAHAKV CGTREYKCDC GTVFSRLMNK LRARTADRFD DSCTLVPKGK GHVPVSPRPH 240 LGRDSFVTHR AFCDALAQEN SKLAQPMNMA TVASALQGQA ALPPSTLQAD DDVLDAAVDD 300 FDGMMDTKSP QLRMLPISDD PPLIPPPLGM AGCMLSSLAA RSVTAPAFSF SGNSRINNMM 360 GLDMPHSDPG VGFSSASLSA TALLQKAAEL GATTSVYGSA PGFPGSGFGP MFGGGPDHVP 420 PMSPFGPPLP AQTQLVGFDV GELLPGQQYR GGSMTRAIGS LMHGGLQQGV DHRRQDDDDD 480 DKRVVDDQSF SGVGPFGSSP MDSGKKKHQH FVLVHGVCHG AWCWYKVATI LESAGHRVTA 540 LDMAGCGVSA VRVEEVRSFD KYSRPLLDAV AAAPPGEKVV LVGHSFGGHS LALAMQRHPE 600 KVAVALFVSA AVPFVGRPMS LFLEQVQMGS PHPSIHQFLH EVRAFSDVLS MGTFGIAERN 660 SEDPVETFLL GPEWMSQRMY QLSPPEDLKL ATMLVRPSQL FLKDGTMTGE RVLTEDGYGA 720 VSRVLVVTEE DKTWPAEDQR RVAASCGPGV EVRAIEGSDH MPMFSKPAVL AQLIMEVADK 780 YA

Sequence ? help Back to Top

Protein Sequence Length: 782 aa Download sequence Send to blast

MSAAEEELLQ QRRYRVIKPF MGSPPAPGMG NDDDGDLQPV TAGTSEPPPA GPPAAKKKRS  60
LPGTPDPTAE VIALSPKTLM ATNRFVCEIC HKGFQRDQNL QLHRRGHNLP WKLRQRGGGG  120
GGADGGGPPR KRVYVCPELS CVHHNPARAL GDLTGIKKHY CRKHGEKKWK CERCAKRYAV  180
QSDWKAHAKV CGTREYKCDC GTVFSRLMNK LRARTADRFD DSCTLVPKGK GHVPVSPRPH  240
LGRDSFVTHR AFCDALAQEN SKLAQPMNMA TVASALQGQA ALPPSTLQAD DDVLDAAVDD  300
FDGMMDTKSP QLRMLPISDD PPLIPPPLGM AGCMLSSLAA RSVTAPAFSF SGNSRINNMM  360
GLDMPHSDPG VGFSSASLSA TALLQKAAEL GATTSVYGSA PGFPGSGFGP MFGGGPDHVP  420
PMSPFGPPLP AQTQLVGFDV GELLPGQQYR GGSMTRAIGS LMHGGLQQGV DHRRQDDDDD  480
DKRVVDDQSF SGVGPFGSSP MDSGKKKHQH FVLVHGVCHG AWCWYKVATI LESAGHRVTA  540
LDMAGCGVSA VRVEEVRSFD KYSRPLLDAV AAAPPGEKVV LVGHSFGGHS LALAMQRHPE  600
KVAVALFVSA AVPFVGRPMS LFLEQVQMGS PHPSIHQFLH EVRAFSDVLS MGTFGIAERN  660
SEDPVETFLL GPEWMSQRMY QLSPPEDLKL ATMLVRPSQL FLKDGTMTGE RVLTEDGYGA  720
VSRVLVVTEE DKTWPAEDQR RVAASCGPGV EVRAIEGSDH MPMFSKPAVL AQLIMEVADK  780
YA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2wfl_A	8e-62	503	779	5	263	POLYNEURIDINE-ALDEHYDE ESTERASE
2wfl_B	8e-62	503	779	5	263	POLYNEURIDINE-ALDEHYDE ESTERASE
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025817951.1	1e-172	protein indeterminate-domain 2-like
TrEMBL	A0A0E0JTD1	0.0	A0A0E0JTD1_ORYPU; Uncharacterized protein
STRING	OPUNC01G42220.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12554	25	34