PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc01181.1.g00200.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 312aa MW: 33641.4 Da PI: 10.1163

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01181.1.g00200.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	89.5	5.8e-28	17	162	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk. 79 lppGfrF+Ptdeelvv+yL++k+ g +l++ vi+ v d+y ++Pwd+p a++ e yfF+ r ++ + + ++ +t Zmw_sc01181.1.g00200.1.am.mk 17 LPPGFRFKPTDEELVVQYLRRKAFGAPLPA-AVIPVVrDLYGLDPWDIP---GASDGEKYFFAIRPAASGHVELPRGKTGg 93 79**************************.8899999*******...3467899**9998855444444323 PP NAM 80 .......sgyWkatgkdkevlsk.....kgelvglkktLvfy........kgrapkgektdWvmheyrl 128 sg+Wk gk ++v+ ++ lvg+++ L+f k+ ap g + Wvmheyrl Zmw_sc01181.1.g00200.1.am.mk 94 sggatpaSGRWKPDGKGRPVVLPrpcggGSLLVGVRRALAFAplrgkkntKQAAPAGLTAGWVMHEYRL 162 33333459*********99899877777******9998887778899999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-32	11	168	IPR003441	NAC domain
PROSITE profile	PS51005	37.979	17	235	IPR003441	NAC domain
Pfam	PF02365	6.2E-18	18	162	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MERAPVLVRH AGGVATLPPG FRFKPTDEEL VVQYLRRKAF GAPLPAAVIP VVRDLYGLDP 60 WDIPGASDGE KYFFAIRPAA SGHVELPRGK TGGSGGATPA SGRWKPDGKG RPVVLPRPCG 120 GGSLLVGVRR ALAFAPLRGK KNTKQAAPAG LTAGWVMHEY RLAAALLHKN LVPRMCDDLF 180 AVCLSHCRRS CCVACMSGSN GWFIHWYQIV PISSSRDRSA ETTEGEWVVC RVFRKSRQQQ 240 PRRRDQAVPA GDGTVPRRTM TSLSAASSAS CVTDGSDQDD EVSSQRSSEL DKRPATHGQG 300 LLALRGDYNS LA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-20	9	162	7	140	Stress-induced transcription factor NAC1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004974022.1	1e-78	NAC domain-containing protein 18
TrEMBL	K3YJI9	2e-77	K3YJI9_SETIT; Uncharacterized protein
STRING	Si014408m	4e-78	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11818	31	40