PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01170.1.g00290.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 543aa MW: 56769.5 Da PI: 9.1333

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01170.1.g00290.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	60	82	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Zmw_sc01170.1.g00290.1.am.mkhc 60 FVCEICNKGFQRDQNLQLHRRGH 82 89*******************88 PP
2	zf-C2H2	13.8	0.00017	136	158	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Zmw_sc01170.1.g00290.1.am.mkhc 136 WKCDKCSKKYAVQSDWKAHVKTC 158 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.8E-5	59	82	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.76E-7	59	82	No hit	No description
PROSITE profile	PS50157	10.949	60	82	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	60	82	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	62	82	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	101	131	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.3E-4	124	157	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.76E-7	131	156	No hit	No description
SMART	SM00355	90	136	156	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MEVQPTPTTT PVASSGGAQP QQLPPPGPPA KKKRALPGMP DPGAEVIALS PKTLLATNRF 60 VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RSGKEARKRV YVCPEPSCVH HDPTRALGDL 120 TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD WKAHVKTCGS REYRCDCGTL FSRRDSFITH 180 RAFCDALAEE SAKAHAGAPA EEDGRSAAVG PPPAPPPSQV PPPAAPAPVR HQPPPPVPAA 240 PPAPHHAEQR NERETNAPEP VQFTPPPQAP AMPVPSQAPA TEANVCVGTS SSRSSVAAAS 300 QSLIGGMFAP SSMAPAAPQF TNLGDGVRGP DRALPVKPPP LCLARDAPSS IFSAPVATDR 360 QHFAPQPPPP PPSPSPHMSA TALLQKAAQM GATSSSSSFL RGLGLDVSTS SPGPSSSGPQ 420 HHPETPLQQW PPRVETDASA PMLSAGLVLG LPYDSTGAPV CLPELMMGQS TLFSAKPATL 480 DFLGLGMSPT DAPASRGLSP FIQPIGGAMG IGGSSAGAAE TFGAGHGAQA KPWERNPSSS 540 PIL

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MEVQPTPTTT PVASSGGAQP QQLPPPGPPA KKKRALPGMP DPGAEVIALS PKTLLATNRF  60
VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RSGKEARKRV YVCPEPSCVH HDPTRALGDL  120
TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD WKAHVKTCGS REYRCDCGTL FSRRDSFITH  180
RAFCDALAEE SAKAHAGAPA EEDGRSAAVG PPPAPPPSQV PPPAAPAPVR HQPPPPVPAA  240
PPAPHHAEQR NERETNAPEP VQFTPPPQAP AMPVPSQAPA TEANVCVGTS SSRSSVAAAS  300
QSLIGGMFAP SSMAPAAPQF TNLGDGVRGP DRALPVKPPP LCLARDAPSS IFSAPVATDR  360
QHFAPQPPPP PPSPSPHMSA TALLQKAAQM GATSSSSSFL RGLGLDVSTS SPGPSSSGPQ  420
HHPETPLQQW PPRVETDASA PMLSAGLVLG LPYDSTGAPV CLPELMMGQS TLFSAKPATL  480
DFLGLGMSPT DAPASRGLSP FIQPIGGAMG IGGSSAGAAE TFGAGHGAQA KPWERNPSSS  540
PIL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	6e-36	132	193	3	64	Zinc finger protein JACKDAW
5b3h_F	6e-36	132	193	3	64	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004985335.1	0.0	protein indeterminate-domain 1
Swissprot	Q9LVQ7	1e-138	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	K4A877	0.0	K4A877_SETIT; Uncharacterized protein
STRING	Si035083m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]