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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01162.1.g00120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 475aa MW: 50941.8 Da PI: 12.0044 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.5e-18 | 111 | 160 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+WvAeIr+p++ r r +lg+f tae+Aa+a+++a++ l+g Zmw_sc01162.1.g00120.1.am.mk 111 RYRGVRQRS-WGKWVAEIREPRK---RSRKWLGTFTTAEDAARAYDRAALLLYG 160 59****999.**********954...5**********************98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.5E-37 | 111 | 174 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.7E-12 | 111 | 159 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.445 | 111 | 168 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.99E-16 | 111 | 166 | No hit | No description |
SuperFamily | SSF54171 | 1.57E-20 | 111 | 168 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-29 | 112 | 167 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-10 | 112 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-10 | 134 | 150 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
LHAHACSLHC TFSLSLSLRP LYLTTAPLHQ AHPPRPPPPS LARSPQRKAQ HHHPSLSLSS 60 PSLSPFTHIP APLPRPMEPN SQQLPAATAA ESSGGGGSRS RKGGPENGNF RYRGVRQRSW 120 GKWVAEIREP RKRSRKWLGT FTTAEDAARA YDRAALLLYG PRAHLNLTAP PPELLASAQR 180 ASSNAHSSTS APPPLRPILP RPAAASTNQR SPAAFQHHHH HQQQVQLHLL APQLPAQLPP 240 PLYYASTATA STVTTTAQPQ EPAVAPLSMA PLASASVTEE QALTPDEAAA AAGKQSSGSC 300 RRERGASRTG KAAERATERL PTYSVLHPDG SIQVMDNRRA GRAGNDCGTT RRALGTCTQR 360 RDRPIGQGVV RSSLHCTGGN RDVEHKNAAR RAGTNQRPRM ATRGGRARDD GRNRSRTRET 420 QRRARRVTAP AAATTTAAAS GTGHSEGREN ARNPAQTASQ EPTNARTNHL TSLAN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-16 | 112 | 167 | 6 | 62 | ATERF1 |
3gcc_A | 2e-16 | 112 | 167 | 6 | 62 | ATERF1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13303 | 26 | 32 |