PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01161.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 364aa MW: 39053 Da PI: 7.0262

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01161.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.6	1.2e-12	88	132	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+++++ + ++lG+g+W+ I+r Rt+ q+ s+ qky Zmw_sc01161.1.g00090.1.am.mkhc 88 AWTEEEHKKFLLGLNKLGKGDWRGISRNYVISRTPTQVASHAQKY 132 7***************************89**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.945	81	137	IPR017930	Myb domain
SMART	SM00717	2.5E-10	85	135	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.3E-10	87	134	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.7E-17	87	136	IPR006447	Myb domain, plants
SuperFamily	SSF46689	4.93E-15	88	138	IPR009057	Homeodomain-like
Pfam	PF00249	4.1E-11	88	132	IPR001005	SANT/Myb domain
CDD	cd00167	7.95E-9	88	133	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
LFGVRIGDKP SIRKSASMGN IAQLAEGGGG GSREEGYGSD GEHERPHKKR GEGDVAGFSF 60 SPYSDNVKRA SGRQKFLDEF AVLCGGEAWT EEEHKKFLLG LNKLGKGDWR GISRNYVISR 120 TPTQVASHAQ KYFNRQTNVH RRKRRSSLFD MVIDDSADQS LSRSSSQEVE QHLEDPQSVV 180 APPAPVVSSA AVVPRAPAPA SPLPEKMAAP VPPVQVPVSV PPVELEPQPQ LMEQDSVASS 240 SSPGETPMVM QEAVPPYYCP MMVPSPYYPY VPVPYYVPFF YGPPGAVQAP HEVVKPVAVH 300 SKPPVDVEDL YNMSELSLKG ESSANSGAPV SPLPPKPIGR PERQSAFHGK GPPGGSSGGL 360 TPAV

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

LFGVRIGDKP SIRKSASMGN IAQLAEGGGG GSREEGYGSD GEHERPHKKR GEGDVAGFSF  60
SPYSDNVKRA SGRQKFLDEF AVLCGGEAWT EEEHKKFLLG LNKLGKGDWR GISRNYVISR  120
TPTQVASHAQ KYFNRQTNVH RRKRRSSLFD MVIDDSADQS LSRSSSQEVE QHLEDPQSVV  180
APPAPVVSSA AVVPRAPAPA SPLPEKMAAP VPPVQVPVSV PPVELEPQPQ LMEQDSVASS  240
SSPGETPMVM QEAVPPYYCP MMVPSPYYPY VPVPYYVPFF YGPPGAVQAP HEVVKPVAVH  300
SKPPVDVEDL YNMSELSLKG ESSANSGAPV SPLPPKPIGR PERQSAFHGK GPPGGSSGGL  360
TPAV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820943.1	1e-138	transcription factor MYBS3-like
TrEMBL	A0A2T7D3E0	1e-139	A0A2T7D3E0_9POAL; Uncharacterized protein
STRING	Si013948m	1e-135	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12900	26	29