PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01153.1.g00320.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 177aa MW: 20337.5 Da PI: 10.9817

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01153.1.g00320.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.6	1.2e-06	58	80	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H Zmw_sc01153.1.g00320.1.am.mk 58 FVCEICGKGFQRDQNLQLHRRGH 80 89*******************88 PP
2	zf-C2H2	15.2	6.2e-05	134	156	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Zmw_sc01153.1.g00320.1.am.mk 134 WKCDKCNKRYAVQSDWKAHSKTC 156 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.03E-8	57	80	No hit	No description
Pfam	PF12874	0.01	58	80	No hit	No description
PROSITE profile	PS50157	11.614	58	80	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.012	58	80	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.6E-6	58	80	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	60	80	IPR007087	Zinc finger, C2H2
SMART	SM00355	260	99	129	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.8E-5	122	155	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.03E-8	129	154	No hit	No description
SMART	SM00355	110	134	154	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MLLSNNPALA PVTNQQQQQQ PPPSQQAPPA KRKRNLPGTP GKLVIALSPR TLLATNRFVC 60 EICGKGFQRD QNLQLHRRGH NLPWKLRQRT GKEPRKRVYV CPEKSCVHHN PSRALGDLTG 120 IKKHFCRKHG EKKWKCDKCN KRYAVQSDWK AHSKTCGTRE YRCDCGTLFS RRDSFIT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-26	130	177	3	50	Zinc finger protein JACKDAW
5b3h_F	2e-26	130	177	3	50	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269\|PubMed:17785527, ECO:0000269\|PubMed:21935722, ECO:0000269\|PubMed:24821766, ECO:0000269\|PubMed:25829440}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269\|PubMed:21935722}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020191248.1	1e-106	zinc finger protein NUTCRACKER-like
Swissprot	Q9ZWA6	2e-95	IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBL	A0A3B6EG52	1e-105	A0A3B6EG52_WHEAT; Uncharacterized protein
TrEMBL	A0A446NC78	1e-105	A0A446NC78_TRITD; Uncharacterized protein
STRING	OS01T0242200-01	1e-103	(Oryza sativa)
STRING	GRMZM2G151309_P01	1e-103	(Zea mays)
STRING	LPERR01G08450.1	1e-102	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Publications ? help Back to Top
Muñoz-Strale D,León G Identification of two highly specific pollen promoters using transcriptomic data. Plant Physiol. Biochem., 2014. 83: p. 292-9 [PMID:25208507] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]