PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01140.1.g00160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Trihelix | ||||||||
Protein Properties | Length: 710aa MW: 75298.6 Da PI: 6.2307 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 100.1 | 1.8e-31 | 519 | 603 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rW+k+ev aLi++r+ +e r+++ lk+plWeevs++m++ g+ rs+k+Ckekwen+nk+++k ke+ kkr + + +tcpy Zmw_sc01140.1.g00160.1.am.mk 519 RWPKHEVEALIRVRTGLEGRFQEPGLKGPLWEEVSARMAAAGYGRSAKRCKEKWENINKYFRKAKESGKKR-PSQAKTCPY 598 8*********************************************************************8.77778**** PP trihelix 82 fdqle 86 fd+l+ Zmw_sc01140.1.g00160.1.am.mk 599 FDELD 603 ***98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.236 | 512 | 576 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0065 | 516 | 578 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-4 | 516 | 575 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 8.44E-30 | 518 | 583 | No hit | No description |
Pfam | PF13837 | 4.0E-23 | 518 | 605 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 710 aa Download sequence Send to blast |
MQSGYGGVSE FQQFIMDSAF AMSAPPPPPP QPAQPPPPTA GGQELGGPFR YQPLHHHHHA 60 PPMPPHFAHF AGGGIPFTQQ LLHQAATAAG HHPHLQLFQE QQQHHHHHHK PPQPPPPQQP 120 TRWAPQHPHH HHHHHLGFDV EAAVPESSGA AGGSTASGGG ATPGVPPFLA AAMNFKLAVD 180 AGGGSAATGG TDDALNDGGG GGGGMMLHVG GAGADDEAAT ESRLRRWPGD EETSIKEPTW 240 RPLDIDYLHS TSSSKRTGKE KAPTPESPAP AAAAAASYFK KGDDSAAAAA AAASAGGGNY 300 KLFSELEAIC KPGSGGTAGA QTGSGSGLTG DDNVILEPAM PDLPGPEAGD APQLNTSDTS 360 AGEDVAAVVQ RQPQPSSDTT RRKRKRRRQE HLSASASFFE RLVQRLMEHQ ESLHRQFLEA 420 MERRERERAA RNEEWRRQEA EKFAREVAAR AQDRASAAAR EAAIIAYLEK LSGESINLPP 480 PAAPSAEDIS QDAVGKELVA YEGGEAAGGS GALHLSTSRW PKHEVEALIR VRTGLEGRFQ 540 EPGLKGPLWE EVSARMAAAG YGRSAKRCKE KWENINKYFR KAKESGKKRP SQAKTCPYFD 600 ELDRLYSRSS SGNANAGSAG GSGGGAGDEH DAKASSELLD AVVKYPEGPP GFVYDDKDPS 660 SVDAKAPNSE VLRKEGEEGG IGSGRATDDP EPEDHQIQVE ERHGEDDQHE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 380 | 385 | RRKRKR |
2 | 381 | 386 | RKRKRR |
3 | 381 | 387 | RKRKRRR |
4 | 382 | 387 | KRKRRR |
5 | 383 | 387 | RKRRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00651 | PBM | Transfer from LOC_Os02g01380 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004951198.1 | 0.0 | trihelix transcription factor GTL1-like | ||||
TrEMBL | A0A3L6RV10 | 0.0 | A0A3L6RV10_PANMI; Trihelix transcription factor GTL1-like | ||||
STRING | Sb04g000520.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6399 | 35 | 47 |