PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc01131.1.g00250.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 542aa MW: 57257.9 Da PI: 10.3554

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01131.1.g00250.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.3	1.4e-37	335	393	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + +cprC+s++tkfCyynny+++qPr+fCk+CrryWtkGG+lrnvPvGgg+rk+ +ss Zmw_sc01131.1.g00250.1.am.mk 335 EGDPCPRCQSRDTKFCYYNNYNTAQPRHFCKGCRRYWTKGGTLRNVPVGGGTRKKPSSS 393 5679**************************************************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-25	335	386	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.202	337	391	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.4E-31	338	389	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	339	375	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence Send to blast
MEERGERLFS ARRSRREYDE AAGRQRSSQV RPTEHYAAPT ASLASRTALL LLSDQCAKHS 60 WRRLDHSKLL PVTDAADVRA KGSTRPYGRD RAPSRYKIQR LSQARVPYAA RTNSPGTDVP 120 DPPVRQRQNV DDVQYHRAGL GVPSIDPSPH RSPRHGAAPH VTRHGVFCHA GPATAPEVLR 180 GDADAPRAPT ALRFAFVNRP FATPFRRFPA PLSRERDART NRTDGSVAHA GGVRAGRPAA 240 GAAVRGRGPA PAEGVRHASA AVGGRGGYPC DGGGSGGGPV PAVPVAGHQE VSEPAGRRPG 300 QQFAGVDLRR PKGYATPPPP SAAAAGTHVT AAAAEGDPCP RCQSRDTKFC YYNNYNTAQP 360 RHFCKGCRRY WTKGGTLRNV PVGGGTRKKP SSSSSSSSPS SYAAAAKPKR PYKKKRRVAP 420 PEPSVPAPVA CPAVESGKTT LTTTTAVTAD SAKTTTDAAS EITTELVVPA AEDDALTQLL 480 QPEDTAVALG LGLSDFPSLG KSALHDIPDS FEWPAASFDL SACWGTAGGF ADSDPALFLN 540 LP

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence Send to blast

MEERGERLFS ARRSRREYDE AAGRQRSSQV RPTEHYAAPT ASLASRTALL LLSDQCAKHS  60
WRRLDHSKLL PVTDAADVRA KGSTRPYGRD RAPSRYKIQR LSQARVPYAA RTNSPGTDVP  120
DPPVRQRQNV DDVQYHRAGL GVPSIDPSPH RSPRHGAAPH VTRHGVFCHA GPATAPEVLR  180
GDADAPRAPT ALRFAFVNRP FATPFRRFPA PLSRERDART NRTDGSVAHA GGVRAGRPAA  240
GAAVRGRGPA PAEGVRHASA AVGGRGGYPC DGGGSGGGPV PAVPVAGHQE VSEPAGRRPG  300
QQFAGVDLRR PKGYATPPPP SAAAAGTHVT AAAAEGDPCP RCQSRDTKFC YYNNYNTAQP  360
RHFCKGCRRY WTKGGTLRNV PVGGGTRKKP SSSSSSSSPS SYAAAAKPKR PYKKKRRVAP  420
PEPSVPAPVA CPAVESGKTT LTTTTAVTAD SAKTTTDAAS EITTELVVPA AEDDALTQLL  480
QPEDTAVALG LGLSDFPSLG KSALHDIPDS FEWPAASFDL SACWGTAGGF ADSDPALFLN  540
LP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	412	416	KKKRR
2	412	417	KKKRRV

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367