PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01103.1.g00100.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 358aa    MW: 39188.5 Da    PI: 5.641
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01103.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS266.31e-8178342102350
                          GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                                   +le +e e+ vH++D++    +QW+ Ll+ +a+Rpegpp+lR+Tgv++    ++e l +t+  L+k Ae+l+vpf+fn+ v
  Zmw_sc01103.1.g00100.1.am.mk  78 VLEVMEAEKVVHVVDLGGADATQWLELLHLFAARPEGPPHLRLTGVSE----HREILTQTAMVLSKEAERLDVPFQFNP-V 153
                                   89**********************************************....9**************************.7 PP

                          GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrll.....................desvsleserdevLklvkslsPkvvvvv 242
                                   ++rl++l++e+Lrvk+gEala+ ++lqlh ll                     +   +++s+ d++L ++++lsPk+vvv+
  Zmw_sc01103.1.g00100.1.am.mk 154 VTRLDTLDVESLRVKTGEALAITSSLQLHCLLasdddsaavvgkdkdsrrspeSGLSPSTSRVDAFLGALWGLSPKIVVVT 234
                                   9***********************************************9997522233444799***************** PP

                          GRAS 243 eqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323
                                   eqea+hn++ + erf+eal+yy+alfd+le+ ++r s er+ vEr +lg+ei+n+vac gaerrerhe+le+W +r+e aG
  Zmw_sc01103.1.g00100.1.am.mk 235 EQEASHNAPALTERFVEALNYYAALFDCLEVVAARGSVERARVERWMLGEEIKNIVACDGAERRERHERLERWARRMEGAG 315
                                   ********************************************************************************* PP

                          GRAS 324 Fkpvplsekaakqaklllrkvksdgyr 350
                                   F+ vpls++a  qa++  +  + dg++
  Zmw_sc01103.1.g00100.1.am.mk 316 FGRVPLSYYALLQARRAAQGLGCDGFK 342
                                   *********************999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.1431346IPR005202Transcription factor GRAS
PfamPF035143.5E-7978342IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MVQDEEGSSS SVTSSPLRSF SSMPLHPAAA SPTPPWLLRD LRSDERGLIL IHLLLNGAAA  60
ASAGRLDAVD AALEHISVLE VMEAEKVVHV VDLGGADATQ WLELLHLFAA RPEGPPHLRL  120
TGVSEHREIL TQTAMVLSKE AERLDVPFQF NPVVTRLDTL DVESLRVKTG EALAITSSLQ  180
LHCLLASDDD SAAVVGKDKD SRRSPESGLS PSTSRVDAFL GALWGLSPKI VVVTEQEASH  240
NAPALTERFV EALNYYAALF DCLEVVAARG SVERARVERW MLGEEIKNIV ACDGAERRER  300
HERLERWARR MEGAGFGRVP LSYYALLQAR RAAQGLGCDG FKDRAIFSVS AWRGRRID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-4077355118380Protein SCARECROW
5b3h_D3e-4077355118380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971220.11e-176scarecrow-like protein 3
RefseqXP_022682001.11e-176scarecrow-like protein 3
SwissprotQ9LPR81e-111SCL3_ARATH; Scarecrow-like protein 3
TrEMBLK3XHR41e-177K3XHR4_SETIT; Uncharacterized protein
STRINGSi001436m1e-177(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]