PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc01090.1.g00170.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GATA

Protein Properties

Length: 399aa MW: 42444.7 Da PI: 6.2389

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01090.1.g00170.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	58.7	7.5e-19	314	348	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+C ttkTp+WR gp+g+ tLCnaCGl+y kg+ Zmw_sc01090.1.g00170.1.sm.mk 314 CSHCSTTKTPQWRAGPRGPGTLCNACGLRYTDKGS 348 ******************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	8.0E-17	308	363	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	12.123	308	347	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	4.75E-15	310	369	No hit	No description
Gene3D	G3DSA:3.30.50.10	3.4E-15	312	347	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	5.65E-19	313	369	No hit	No description
Pfam	PF00320	1.8E-16	314	348	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	314	339	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MTMSPFFLYN EKEGIDDTPA NLEDGWPRGG LSCPDDELNK VVPVEYFDFD KFPADNTPDD 60 VLGLDGSALS ETSGHAAPTS ALPTASDSAG PCPALDGAAA TGFVPPFQQP GLVDVLDIDS 120 SPPLPDELSC LVATFFEPSW PAQHTLYGVI PDLVPPLPAQ DSESLNCSIA TCTVPLFPAL 180 DVASRSAPLL PAQHAVAGAV VPDTAPPLRA HDTVPPAGPP ATCSTSSGCV SSMPWEHESA 240 PSVAPSPIAA TSVVPRKQRH RSVTRRNPSW LPKSQFYEKP PAAPRAAPSS LKAGGNDKPP 300 VAKHRRNRER DRVCSHCSTT KTPQWRAGPR GPGTLCNACG LRYTDKGSLL ETYRPTTSPS 360 FDSGKHSNRP SKAAKIMEKA ELAKVMDDKY RRRLSESSP

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MTMSPFFLYN EKEGIDDTPA NLEDGWPRGG LSCPDDELNK VVPVEYFDFD KFPADNTPDD  60
VLGLDGSALS ETSGHAAPTS ALPTASDSAG PCPALDGAAA TGFVPPFQQP GLVDVLDIDS  120
SPPLPDELSC LVATFFEPSW PAQHTLYGVI PDLVPPLPAQ DSESLNCSIA TCTVPLFPAL  180
DVASRSAPLL PAQHAVAGAV VPDTAPPLRA HDTVPPAGPP ATCSTSSGCV SSMPWEHESA  240
PSVAPSPIAA TSVVPRKQRH RSVTRRNPSW LPKSQFYEKP PAAPRAAPSS LKAGGNDKPP  300
VAKHRRNRER DRVCSHCSTT KTPQWRAGPR GPGTLCNACG LRYTDKGSLL ETYRPTTSPS  360
FDSGKHSNRP SKAAKIMEKA ELAKVMDDKY RRRLSESSP

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP20691	3	7