![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc01079.1.g00290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 361aa MW: 38680.4 Da PI: 8.9987 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.8 | 2.7e-18 | 121 | 171 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr+++ +g Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g Zmw_sc01079.1.g00290.1.am.mk 121 PSYRGVRRRS-WGVWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 171 57*****887.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.8E-13 | 121 | 171 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.19E-28 | 121 | 181 | No hit | No description |
SuperFamily | SSF54171 | 2.81E-20 | 122 | 180 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.1E-36 | 122 | 185 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.512 | 122 | 179 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-31 | 122 | 180 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.7E-10 | 123 | 134 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.7E-10 | 145 | 161 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 361 aa Download sequence Send to blast |
MARSTSARYL YQPGSAPLSA RYLPIRVLAA CLIATRAMES DAIHAPATTS SSSDSGSCVI 60 NGAQELSKNG KPSTKHLKRK RATCLPADPT GTGARVPEAV DDERYGEEGS SRAKGSAGRH 120 PSYRGVRRRS WGVWVSEIRE PRKKSRIWLG TFPTAEMAAR AHDVAALAIK GRAAHLNFPH 180 LAHELPRPAS TSPADIQAAA AAAAAAATDQ CGSSPAAEAA SSSSAACWEE TAAAGHGEEN 240 ALFDLPDLLL DLQNGLWSPP LWAAAEEYDT GDVASLQEPL LWTTDTGIPR DRFVWTNMTG 300 HARGVAVVYG WEVTSRCGEV KQAVLWLYGF KSRNEHLTPW RHVRAHNRPA GRRSPGPPVA 360 V |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-18 | 113 | 180 | 5 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008646010.1 | 2e-71 | ethylene-responsive transcription factor ERF038 | ||||
TrEMBL | A0A3L6EZ19 | 2e-73 | A0A3L6EZ19_MAIZE; Ethylene-responsive transcription factor ERF034 | ||||
STRING | Si017995m | 4e-71 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |